Wall clock time and date at job start Mon Mar 30 2020 03:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30954 * 1 3 3 Si 1.86806 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47013 * 273.53223 * 3 2 1 5 5 H 1.48498 * 109.47096 * 33.53280 * 3 2 1 6 6 H 1.48493 * 109.47044 * 153.53459 * 3 2 1 7 7 C 1.39855 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99781 * 158.92292 * 7 2 1 9 9 C 1.41021 * 120.00268 * 338.92471 * 7 2 1 10 10 C 1.41935 * 121.01640 * 136.56300 * 9 7 2 11 11 O 1.35289 * 120.63091 * 0.04196 * 10 9 7 12 12 N 1.32380 * 118.74199 * 180.02562 * 10 9 7 13 13 C 1.32681 * 120.96112 * 359.97438 * 12 10 9 14 14 N 1.37959 * 118.86013 * 180.02562 * 13 12 10 15 15 N 1.32766 * 122.28315 * 0.27705 * 13 12 10 16 16 C 1.32034 * 121.14745 * 359.44082 * 15 13 12 17 17 Cl 1.73608 * 120.55324 * 180.25259 * 16 15 13 18 18 H 0.96999 * 119.99762 * 0.02562 * 1 2 3 19 19 H 0.96696 * 114.00263 * 269.98231 * 11 10 9 20 20 H 0.97000 * 119.99786 * 0.02562 * 14 13 12 21 21 H 0.97001 * 119.99864 * 179.72232 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 2.4164 2.0896 -1.3974 5 1 1.4804 2.6300 0.7734 6 1 3.5764 1.4198 0.6239 7 6 2.0088 -1.2112 0.0005 8 1 3.0347 -1.2426 -0.3358 9 6 1.3744 -2.3914 0.4402 10 6 1.5244 -3.6107 -0.2707 11 8 2.2828 -3.6675 -1.3896 12 7 0.9083 -4.6915 0.1820 13 6 0.1635 -4.6435 1.2790 14 7 -0.4587 -5.7960 1.7124 15 7 -0.0076 -3.5237 1.9715 16 6 0.5713 -2.3964 1.6010 17 17 0.3421 -0.9425 2.5218 18 1 -0.4850 0.8401 -0.0004 19 1 1.7955 -3.4857 -2.2047 20 1 -0.3475 -6.6227 1.2172 21 1 -1.0037 -5.7807 2.5146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260679908.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:29 Heat of formation + Delta-G solvation = -24.015263 kcal Electronic energy + Delta-G solvation = -12275.760580 eV Core-core repulsion = 9791.045671 eV Total energy + Delta-G solvation = -2484.714909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29520 -38.24738 -37.33479 -35.83667 -34.56453 -33.37576 -31.30576 -26.84413 -24.60551 -23.61099 -19.84294 -19.43203 -18.90151 -17.41800 -16.98728 -16.32608 -15.93954 -15.40990 -15.15423 -14.81927 -13.76596 -13.36461 -12.94553 -12.82924 -12.65670 -12.16860 -11.82415 -11.37355 -11.10496 -10.85435 -10.35186 -9.94985 -8.96486 -8.60374 -6.32609 0.35179 0.67798 1.28092 1.44186 1.48348 1.57099 2.25863 2.62068 2.76092 3.11096 3.46556 4.32584 4.49071 4.98558 5.21996 5.33555 5.99618 6.27557 6.52720 6.71935 6.77590 6.86734 6.98589 7.81191 8.34921 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.038294 B = 0.013852 C = 0.010802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.008863 B = 2020.818143 C = 2591.603996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.059 3.941 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.472 4.472 8 H 0.085 0.915 9 C -0.034 4.034 10 C 0.282 3.718 11 O -0.471 6.471 12 N -0.576 5.576 13 C 0.486 3.514 14 N -0.821 5.821 15 N -0.568 5.568 16 C 0.176 3.824 17 Cl -0.032 7.032 18 H 0.290 0.710 19 H 0.403 0.597 20 H 0.415 0.585 21 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -1.378 0.547 1.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.159 4.159 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.103 0.897 9 C -0.044 4.044 10 C 0.092 3.908 11 O -0.278 6.278 12 N -0.309 5.309 13 C 0.129 3.871 14 N -0.377 5.377 15 N -0.294 5.294 16 C 0.002 3.998 17 Cl -0.004 7.004 18 H 0.100 0.900 19 H 0.262 0.738 20 H 0.247 0.753 21 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.523 -1.979 1.223 2.385 hybrid contribution -0.015 1.322 -0.455 1.398 sum -0.538 -0.658 0.769 1.146 Atomic orbital electron populations 1.69889 1.08836 1.31012 1.33613 1.26282 0.95004 1.03177 0.91413 0.85521 0.79756 0.77258 0.79580 1.18414 1.19401 1.18269 1.19068 0.99462 0.91089 1.40594 0.89676 1.18914 0.97099 0.95084 0.93300 1.19308 0.93916 0.87785 0.89836 1.84518 1.35388 1.92696 1.15169 1.66796 1.13593 1.33488 1.17017 1.18491 0.93405 0.87060 0.88152 1.41003 1.56870 1.06595 1.33193 1.66554 1.28545 0.98895 1.35412 1.22025 1.00125 0.86409 0.91199 1.98248 1.95679 1.33894 1.72564 0.89958 0.73815 0.75291 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.89 11.12 21.82 0.24 -39.65 14 2 C 0.06 2.81 3.83 85.22 0.33 3.13 14 3 Si 0.96 36.83 29.61 68.60 2.03 38.86 14 4 H -0.26 -9.48 7.11 99.48 0.71 -8.78 14 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 7 C -0.47 -23.88 8.35 23.34 0.19 -23.69 14 8 H 0.09 4.26 7.93 -2.91 -0.02 4.24 14 9 C -0.03 -1.75 5.30 -20.96 -0.11 -1.86 14 10 C 0.28 13.85 7.87 85.53 0.67 14.52 14 11 O -0.47 -20.19 13.10 -85.75 -1.12 -21.32 14 12 N -0.58 -27.08 10.45 -309.51 -3.23 -30.31 14 13 C 0.49 21.82 8.65 261.50 2.26 24.09 14 14 N -0.82 -26.90 9.04 -59.78 -0.54 -27.44 14 15 N -0.57 -27.70 10.41 -187.20 -1.95 -29.65 14 16 C 0.18 9.07 6.97 85.38 0.60 9.66 14 17 Cl -0.03 -1.52 25.21 -2.72 -0.07 -1.59 14 18 H 0.29 13.16 8.30 -92.71 -0.77 12.39 14 19 H 0.40 13.56 9.06 -74.06 -0.67 12.88 14 20 H 0.42 11.41 8.94 -92.71 -0.83 10.58 14 21 H 0.41 11.64 8.94 -92.71 -0.83 10.81 14 Total: -1.00 -60.00 214.40 -1.70 -61.70 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -1.00 Total: 23.55 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 3.94 Total: 25.85 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -5.48 Total: -127.06 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.12 Total: -21.32 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.59 kcal Total: -60.00 -1.70 -61.70 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679908.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.686 kcal (2) G-P(sol) polarization free energy of solvation -60.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds