Wall clock time and date at job start Mon Mar 30 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47016 * 110.99938 * 2 1 4 4 C 1.53093 * 109.26032 * 182.39045 * 3 2 1 5 5 O 1.43016 * 109.26210 * 303.15607 * 4 3 2 6 6 C 1.43010 * 113.73889 * 58.66563 * 5 4 3 7 7 C 1.47008 * 111.00261 * 123.63305 * 2 1 3 8 8 H 1.08998 * 109.54714 * 297.56695 * 7 2 1 9 9 C 1.53002 * 109.50515 * 57.67604 * 7 2 1 10 10 C 1.52996 * 109.47143 * 65.70552 * 9 7 2 11 11 H 1.09000 * 109.47431 * 54.31267 * 10 9 7 12 12 N 1.46897 * 109.46980 * 294.30850 * 10 9 7 13 13 C 1.50704 * 109.47221 * 174.31448 * 10 9 7 14 14 H 1.08004 * 119.99534 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00309 * 179.97438 * 13 10 9 16 16 N 1.31521 * 119.99447 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00320 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47318 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47009 * 300.00042 * 17 15 13 20 20 H 1.48500 * 109.46929 * 59.99909 * 17 15 13 21 21 H 1.09003 * 109.47378 * 300.75161 * 1 2 3 22 22 H 1.08997 * 109.47592 * 60.75559 * 1 2 3 23 23 H 1.08999 * 109.46737 * 180.75543 * 1 2 3 24 24 H 1.09008 * 109.50414 * 62.45969 * 3 2 1 25 25 H 1.08996 * 109.54228 * 302.35556 * 3 2 1 26 26 H 1.09001 * 109.50798 * 183.21741 * 4 3 2 27 27 H 1.09007 * 109.50580 * 63.09117 * 4 3 2 28 28 H 1.08999 * 109.50594 * 181.40105 * 6 5 4 29 29 H 1.09000 * 109.50537 * 61.26557 * 6 5 4 30 30 H 1.09003 * 109.47335 * 305.70110 * 9 7 2 31 31 H 1.09010 * 109.47297 * 185.70259 * 9 7 2 32 32 H 1.00902 * 111.00372 * 300.00592 * 12 10 9 33 33 H 1.00908 * 110.99801 * 63.95619 * 12 10 9 34 34 H 0.96999 * 120.00586 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0175 0.5575 1.0403 6 6 3.5250 -0.7848 1.0709 7 6 1.9959 -0.7601 1.1427 8 1 1.6828 -0.2850 2.0723 9 6 1.4590 -2.1921 1.0949 10 6 2.0179 -2.9054 -0.1379 11 1 3.1058 -2.8389 -0.1342 12 7 1.4924 -2.2679 -1.3526 13 6 1.6030 -4.3539 -0.1113 14 1 1.0013 -4.7284 0.7037 15 6 1.9916 -5.2011 -1.1273 16 7 2.7239 -4.7449 -2.1200 17 14 1.4780 -6.9968 -1.0940 18 1 2.0192 -7.6888 -2.2912 19 1 2.0101 -7.6411 0.1336 20 1 -0.0042 -7.0878 -1.0981 21 1 -0.3634 0.5255 0.8832 22 1 -0.3634 0.5020 -0.8966 23 1 -0.3633 -1.0276 0.0135 24 1 1.6827 1.8826 0.9111 25 1 1.6133 1.9099 -0.8677 26 1 3.9221 2.3399 -0.0029 27 1 3.8385 0.8645 -0.9965 28 1 3.9222 -1.2984 1.9464 29 1 3.8385 -1.3082 0.1676 30 1 0.3706 -2.1705 1.0400 31 1 1.7669 -2.7258 1.9941 32 1 0.4849 -2.3164 -1.3796 33 1 1.8105 -1.3131 -1.4264 34 1 2.9909 -3.8125 -2.1371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:07 Heat of formation + Delta-G solvation = -32.279428 kcal Electronic energy + Delta-G solvation = -15625.315304 eV Core-core repulsion = 13172.458065 eV Total energy + Delta-G solvation = -2452.857240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76238 -36.28953 -34.56921 -32.03615 -30.19036 -28.89826 -26.79589 -24.86835 -23.96634 -22.52691 -20.92908 -19.01921 -16.84006 -16.16501 -16.00349 -15.13193 -14.88158 -14.72804 -13.81943 -13.63454 -13.54597 -13.04953 -12.49837 -12.24516 -12.19526 -11.68738 -11.47705 -11.04823 -10.81231 -10.61241 -10.60456 -10.28495 -10.02306 -9.79912 -9.20689 -8.43744 -8.21445 -8.11759 -6.89633 -5.99441 -3.83268 3.53366 3.55346 3.73885 3.92740 4.07470 4.70337 4.98273 5.10543 5.16056 5.28785 5.43882 5.58434 5.62476 5.65948 5.71023 5.74872 5.91201 6.00835 6.03173 6.24165 6.30591 6.45970 6.71523 6.89974 7.12664 7.17083 7.34405 7.56868 8.24782 8.55986 8.99207 9.14932 9.37131 10.01739 11.38307 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047384 B = 0.008752 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.776650 B = 3198.682296 C = 3339.674007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.017 3.983 4 C 0.063 3.937 5 O -0.392 6.392 6 C 0.063 3.937 7 C 0.050 3.950 8 H 0.035 0.965 9 C -0.138 4.138 10 C 0.214 3.786 11 H 0.027 0.973 12 N -0.837 5.837 13 C -0.618 4.618 14 H 0.039 0.961 15 C 0.036 3.964 16 N -0.895 5.895 17 Si 1.060 2.940 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.292 1.292 21 H 0.020 0.980 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.313 0.687 33 H 0.325 0.675 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 11.370 4.710 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.112 4.112 4 C -0.014 4.014 5 O -0.311 6.311 6 C -0.013 4.013 7 C -0.058 4.058 8 H 0.053 0.947 9 C -0.179 4.179 10 C 0.105 3.895 11 H 0.045 0.955 12 N -0.370 5.370 13 C -0.657 4.657 14 H 0.057 0.943 15 C -0.173 4.173 16 N -0.530 5.530 17 Si 0.890 3.110 18 H -0.211 1.211 19 H -0.219 1.219 20 H -0.219 1.219 21 H 0.038 0.962 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.028 9.255 3.169 9.837 hybrid contribution -1.326 2.405 2.207 3.523 sum -2.354 11.660 5.377 13.054 Atomic orbital electron populations 1.22520 0.87290 1.03145 1.00018 1.62207 1.08038 1.12198 1.42558 1.22803 0.96734 0.90531 1.01105 1.22616 0.92141 0.96074 0.90586 1.87920 1.70140 1.24690 1.48321 1.22926 0.92042 0.82754 1.03585 1.22454 0.96069 0.96525 0.90795 0.94724 1.22544 1.00194 0.91727 1.03387 1.19051 0.94465 0.92928 0.83078 0.95547 1.59400 1.13094 1.22333 1.42181 1.21834 1.39218 0.93859 1.10809 0.94290 1.25502 0.94527 1.04535 0.92735 1.70526 1.31903 1.20105 1.30443 0.83708 0.75784 0.75834 0.75648 1.21060 1.21936 1.21927 0.96159 0.91434 0.89939 0.94570 0.89897 0.88996 0.92062 0.88728 0.90639 0.92635 0.92303 0.87577 0.85744 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.61 60.06 0.52 0.78 16 2 N -0.52 -8.21 1.94 -234.58 -0.45 -8.67 16 3 C 0.02 0.22 5.66 -3.71 -0.02 0.20 16 4 C 0.06 0.86 7.01 37.21 0.26 1.12 16 5 O -0.39 -6.47 10.83 -35.23 -0.38 -6.86 16 6 C 0.06 1.11 5.89 37.21 0.22 1.33 16 7 C 0.05 0.86 2.27 -67.60 -0.15 0.71 16 8 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.14 -2.79 4.45 -26.73 -0.12 -2.91 16 10 C 0.21 5.23 1.95 -68.87 -0.13 5.09 16 11 H 0.03 0.71 5.81 -51.93 -0.30 0.41 16 12 N -0.84 -19.52 7.08 -5.66 -0.04 -19.56 16 13 C -0.62 -17.43 8.73 -34.44 -0.30 -17.73 16 14 H 0.04 1.10 7.74 -52.48 -0.41 0.69 16 15 C 0.04 1.06 5.39 -17.82 -0.10 0.96 16 16 N -0.90 -27.62 13.50 55.43 0.75 -26.87 16 17 Si 1.06 25.80 29.90 -169.99 -5.08 20.71 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.08 1.31 4.79 -51.93 -0.25 1.07 16 24 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.08 1.49 6.03 -51.93 -0.31 1.18 16 30 H 0.06 1.11 5.98 -51.93 -0.31 0.80 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.31 7.21 7.77 -39.29 -0.31 6.91 16 33 H 0.32 6.87 6.06 -39.29 -0.24 6.63 16 34 H 0.29 8.98 6.39 -40.82 -0.26 8.72 16 LS Contribution 258.38 15.07 3.89 3.89 Total: -1.00 -30.78 258.38 -6.13 -36.91 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.98 Total: 10.89 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.17 Total: -10.45 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.25 Total: -55.10 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.38 Total: -6.86 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.78 -6.13 -36.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.631 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds