Wall clock time and date at job start Mon Mar 30 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46887 * 1 3 3 C 1.47011 * 111.00212 * 2 1 4 4 C 1.53100 * 109.26322 * 182.39093 * 3 2 1 5 5 O 1.43011 * 109.25915 * 303.15521 * 4 3 2 6 6 C 1.43020 * 113.74186 * 58.66365 * 5 4 3 7 7 C 1.47019 * 111.00199 * 123.63479 * 2 1 3 8 8 H 1.08995 * 109.54439 * 297.56388 * 7 2 1 9 9 C 1.53004 * 109.50178 * 57.67601 * 7 2 1 10 10 C 1.53002 * 109.46792 * 182.71794 * 9 7 2 11 11 H 1.09005 * 109.46802 * 304.00859 * 10 9 7 12 12 N 1.46900 * 109.47205 * 64.00382 * 10 9 7 13 13 C 1.50701 * 109.46965 * 184.01051 * 10 9 7 14 14 H 1.07994 * 120.00016 * 354.49635 * 13 10 9 15 15 C 1.37880 * 119.99703 * 174.50616 * 13 10 9 16 16 N 1.31515 * 120.00166 * 350.72267 * 15 13 10 17 17 Si 1.86795 * 119.99660 * 170.73121 * 15 13 10 18 18 H 1.48497 * 109.47456 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47075 * 239.99433 * 17 15 13 20 20 H 1.48502 * 109.47253 * 119.99542 * 17 15 13 21 21 H 1.09009 * 109.47453 * 290.08649 * 1 2 3 22 22 H 1.09000 * 109.47487 * 50.08258 * 1 2 3 23 23 H 1.08994 * 109.47458 * 170.08580 * 1 2 3 24 24 H 1.09006 * 109.50621 * 62.45961 * 3 2 1 25 25 H 1.08998 * 109.54667 * 302.34972 * 3 2 1 26 26 H 1.08998 * 109.51018 * 183.21572 * 4 3 2 27 27 H 1.09004 * 109.50335 * 63.08671 * 4 3 2 28 28 H 1.08989 * 109.51060 * 181.39351 * 6 5 4 29 29 H 1.09005 * 109.50109 * 61.26600 * 6 5 4 30 30 H 1.08991 * 109.47168 * 62.71495 * 9 7 2 31 31 H 1.08994 * 109.46718 * 302.70998 * 9 7 2 32 32 H 1.00890 * 111.00410 * 299.64788 * 12 10 9 33 33 H 1.00904 * 110.99649 * 63.60829 * 12 10 9 34 34 H 0.97001 * 119.99722 * 3.34038 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3724 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0174 0.5574 1.0403 6 6 3.5249 -0.7849 1.0710 7 6 1.9958 -0.7602 1.1427 8 1 1.6827 -0.2850 2.0723 9 6 1.4589 -2.1922 1.0948 10 6 1.9529 -2.9633 2.3205 11 1 3.0415 -2.9231 2.3605 12 7 1.3955 -2.3579 3.5373 13 6 1.5065 -4.3994 2.2239 14 1 0.8545 -4.7094 1.4207 15 6 1.9303 -5.3176 3.1612 16 7 2.8628 -4.9892 4.0286 17 14 1.1802 -7.0279 3.1988 18 1 0.1595 -7.1445 2.1266 19 1 0.5397 -7.2585 4.5186 20 1 2.2448 -8.0402 2.9816 21 1 -0.3634 0.3530 0.9652 22 1 -0.3634 0.6594 -0.7882 23 1 -0.3634 -1.0122 -0.1769 24 1 1.6827 1.8825 0.9111 25 1 1.6134 1.9099 -0.8677 26 1 3.9221 2.3398 -0.0029 27 1 3.8384 0.8644 -0.9964 28 1 3.9221 -1.2985 1.9464 29 1 3.8385 -1.3084 0.1677 30 1 1.8142 -2.6833 0.1890 31 1 0.3692 -2.1717 1.0935 32 1 1.6853 -1.3957 3.6280 33 1 0.3896 -2.4355 3.5516 34 1 3.2179 -4.0866 4.0405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:13 Heat of formation + Delta-G solvation = -46.160097 kcal Electronic energy + Delta-G solvation = -15238.260808 eV Core-core repulsion = 12784.801657 eV Total energy + Delta-G solvation = -2453.459151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64377 -36.19598 -35.06511 -32.13701 -30.52153 -28.69826 -27.03256 -24.95466 -24.02667 -22.68961 -20.69996 -19.39294 -16.99794 -16.18094 -15.96314 -15.22907 -14.80420 -14.61806 -14.32875 -13.72330 -13.65412 -13.18087 -12.69071 -12.44597 -12.15053 -11.89220 -11.51205 -11.27088 -10.82480 -10.70729 -10.58056 -10.33851 -10.06533 -9.85811 -9.36974 -8.66404 -8.26953 -8.11269 -7.33047 -6.22421 -3.99089 3.48541 3.52713 3.65284 3.89370 4.04319 4.60598 4.92866 5.07024 5.11949 5.21349 5.38840 5.45320 5.53001 5.58018 5.65354 5.70499 5.84073 5.94200 6.01839 6.09473 6.21704 6.36136 6.51565 6.87405 7.08113 7.13725 7.30442 7.34493 8.04037 8.35225 8.72207 8.80868 9.05728 9.83259 11.18562 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048959 B = 0.007786 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.772503 B = 3595.547547 C = 3881.527726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.017 3.983 4 C 0.063 3.937 5 O -0.388 6.388 6 C 0.069 3.931 7 C 0.049 3.951 8 H 0.044 0.956 9 C -0.129 4.129 10 C 0.205 3.795 11 H 0.034 0.966 12 N -0.837 5.837 13 C -0.613 4.613 14 H 0.045 0.955 15 C 0.038 3.962 16 N -0.892 5.892 17 Si 1.069 2.931 18 H -0.292 1.292 19 H -0.288 1.288 20 H -0.289 1.289 21 H 0.023 0.977 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.297 0.703 33 H 0.323 0.677 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 11.359 -7.758 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.263 5.263 3 C -0.112 4.112 4 C -0.014 4.014 5 O -0.307 6.307 6 C -0.008 4.008 7 C -0.059 4.059 8 H 0.061 0.939 9 C -0.169 4.169 10 C 0.096 3.904 11 H 0.052 0.948 12 N -0.365 5.365 13 C -0.652 4.652 14 H 0.064 0.936 15 C -0.171 4.171 16 N -0.526 5.526 17 Si 0.898 3.102 18 H -0.218 1.218 19 H -0.214 1.214 20 H -0.216 1.216 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.500 9.190 -6.888 11.583 hybrid contribution -1.261 2.520 -0.959 2.976 sum -2.760 11.710 -7.847 14.364 Atomic orbital electron populations 1.22374 0.87347 1.02794 0.99745 1.62265 1.08021 1.12463 1.43551 1.22789 0.96741 0.90558 1.01084 1.22605 0.92175 0.96223 0.90420 1.87980 1.69985 1.24652 1.48075 1.22856 0.92217 0.82567 1.03133 1.22473 0.95862 0.96600 0.90965 0.93851 1.22441 0.99894 0.91605 1.03010 1.19198 0.95155 0.93512 0.82566 0.94824 1.59443 1.14323 1.18975 1.43773 1.21805 1.35803 0.93013 1.14561 0.93635 1.25629 0.94349 1.04053 0.93036 1.70567 1.22867 1.23068 1.36093 0.83580 0.75744 0.75176 0.75688 1.21821 1.21446 1.21575 0.95815 0.91909 0.90582 0.94411 0.90145 0.88931 0.92546 0.87608 0.92366 0.91816 0.92874 0.89165 0.86506 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.01 60.06 0.54 0.89 16 2 N -0.54 -8.23 4.79 -234.58 -1.12 -9.36 16 3 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 4 C 0.06 0.82 7.01 37.21 0.26 1.08 16 5 O -0.39 -6.46 10.83 -35.23 -0.38 -6.84 16 6 C 0.07 1.21 5.92 37.21 0.22 1.43 16 7 C 0.05 0.86 1.88 -67.59 -0.13 0.73 16 8 H 0.04 0.79 6.63 -51.93 -0.34 0.45 16 9 C -0.13 -2.60 4.10 -26.73 -0.11 -2.71 16 10 C 0.20 4.92 2.05 -68.86 -0.14 4.78 16 11 H 0.03 0.88 5.74 -51.93 -0.30 0.58 16 12 N -0.84 -19.05 8.74 -5.65 -0.05 -19.10 16 13 C -0.61 -16.99 8.64 -34.44 -0.30 -17.29 16 14 H 0.05 1.27 7.76 -52.49 -0.41 0.86 16 15 C 0.04 1.10 5.38 -17.82 -0.10 1.00 16 16 N -0.89 -27.09 13.62 55.43 0.75 -26.34 16 17 Si 1.07 25.49 29.91 -169.99 -5.08 20.41 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.02 0.32 8.12 -51.92 -0.42 -0.10 16 22 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 23 H 0.08 1.10 6.57 -51.93 -0.34 0.76 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.11 1.99 6.59 -51.94 -0.34 1.65 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.05 1.06 6.36 -51.93 -0.33 0.73 16 32 H 0.30 6.05 7.30 -39.30 -0.29 5.77 16 33 H 0.32 7.17 8.98 -39.29 -0.35 6.82 16 34 H 0.28 8.58 6.76 -40.82 -0.28 8.31 16 LS Contribution 266.51 15.07 4.02 4.02 Total: -1.00 -30.34 266.51 -6.79 -37.13 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.15 Total: 9.97 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.23 Total: -9.89 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.42 Total: -54.79 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.38 Total: -6.84 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.34 -6.79 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.030 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds