Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99867 * 2 1 4 4 C 1.53051 * 109.36286 * 183.18685 * 3 2 1 5 5 N 1.46958 * 109.36653 * 301.60034 * 4 3 2 6 6 C 1.46901 * 111.00064 * 183.18789 * 5 4 3 7 7 C 1.50698 * 109.47029 * 64.84957 * 6 5 4 8 8 H 1.07998 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00447 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00123 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47408 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.46863 * 299.99918 * 11 9 7 14 14 H 1.48499 * 109.47495 * 59.99682 * 11 9 7 15 15 C 1.46960 * 110.87962 * 59.31736 * 5 4 3 16 16 H 1.08999 * 109.48619 * 60.64873 * 15 5 4 17 17 C 1.53003 * 109.48768 * 180.71471 * 15 5 4 18 18 O 1.42897 * 109.47108 * 63.55722 * 17 15 5 19 19 C 1.46955 * 110.99691 * 123.80057 * 2 1 3 20 20 H 1.09006 * 109.46786 * 56.04882 * 1 2 3 21 21 H 1.08995 * 109.47125 * 176.04636 * 1 2 3 22 22 H 1.08999 * 109.47455 * 296.05154 * 1 2 3 23 23 H 1.08999 * 109.48792 * 63.22195 * 3 2 1 24 24 H 1.09001 * 109.48978 * 303.15197 * 3 2 1 25 25 H 1.08998 * 109.49256 * 181.62837 * 4 3 2 26 26 H 1.09004 * 109.50535 * 61.57718 * 4 3 2 27 27 H 1.08996 * 109.47287 * 304.84839 * 6 5 4 28 28 H 1.08999 * 109.46818 * 184.84907 * 6 5 4 29 29 H 0.96997 * 120.00545 * 180.02562 * 10 9 7 30 30 H 1.08992 * 109.46675 * 183.55907 * 17 15 5 31 31 H 1.09004 * 109.46889 * 303.56207 * 17 15 5 32 32 H 0.96698 * 113.99793 * 179.97438 * 18 17 15 33 33 H 1.09003 * 109.49004 * 296.77366 * 19 2 1 34 34 H 1.08998 * 109.49540 * 56.82320 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.0214 1.9705 1.2735 8 1 5.3196 2.7821 1.3965 9 6 7.3769 2.2196 1.3108 10 7 8.2316 1.2314 1.1605 11 14 7.9996 3.9606 1.5764 12 1 9.4846 3.9609 1.5751 13 1 7.5040 4.8357 0.4837 14 1 7.5053 4.4697 2.8809 15 6 3.5234 -0.8061 1.0598 16 1 3.8253 -1.3115 0.1425 17 6 4.0769 -1.5654 2.2674 18 8 3.6113 -0.9510 3.4706 19 6 1.9956 -0.7632 1.1401 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 -0.3634 0.4513 0.9232 23 1 1.6937 1.8773 0.9174 24 1 1.6013 1.9128 -0.8603 25 1 3.9178 2.3448 -0.0513 26 1 3.8256 0.8481 -1.0106 27 1 5.8824 0.1917 0.1027 28 1 5.8824 -0.0760 1.8624 29 1 9.1852 1.4067 1.1872 30 1 3.7369 -2.6003 2.2327 31 1 5.1664 -1.5397 2.2444 32 1 3.9235 -1.3814 4.2782 33 1 1.6937 -0.2820 2.0704 34 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -32.717147 kcal Electronic energy + Delta-G solvation = -15254.232814 eV Core-core repulsion = 12801.356594 eV Total energy + Delta-G solvation = -2452.876221 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95758 -36.15725 -34.77824 -32.43768 -30.90760 -28.69463 -26.03427 -25.73912 -23.51933 -21.67721 -20.88932 -18.92680 -16.85762 -16.36634 -15.53915 -15.09705 -14.45079 -14.37993 -14.26207 -13.44664 -13.18865 -13.14284 -12.58292 -12.16244 -11.84949 -11.68039 -11.32010 -11.07583 -10.82378 -10.68444 -10.61880 -10.27411 -10.10644 -9.71354 -9.29009 -9.07162 -8.37962 -8.02698 -7.11259 -5.99417 -3.99502 3.35850 3.39368 3.42940 4.26362 4.44917 4.79203 4.91961 5.28315 5.36182 5.39917 5.63059 5.66081 5.69458 5.77140 5.88047 5.93541 5.99860 6.00874 6.19370 6.34028 6.48347 6.67164 6.75069 7.26837 7.33665 7.39250 7.43872 7.84682 8.11955 8.18695 8.28291 8.62444 9.07418 9.63937 11.11662 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035672 B = 0.009078 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.748375 B = 3083.594109 C = 3567.205535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.057 3.943 4 C 0.066 3.934 5 N -0.523 5.523 6 C 0.191 3.809 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.898 3.102 12 H -0.288 1.288 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.086 3.914 16 H 0.047 0.953 17 C 0.083 3.917 18 O -0.553 6.553 19 C 0.070 3.930 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.027 0.973 27 H -0.012 1.012 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.366 0.634 33 H 0.050 0.950 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -4.538 -0.074 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.071 4.071 4 C -0.062 4.062 5 N -0.249 5.249 6 C 0.066 3.934 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.023 4.023 16 H 0.065 0.935 17 C 0.004 3.996 18 O -0.357 6.357 19 C -0.058 4.058 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.005 0.995 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.068 0.932 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.207 -4.169 -0.521 11.969 hybrid contribution 0.772 0.455 0.475 1.014 sum -10.436 -3.713 -0.046 11.077 Atomic orbital electron populations 1.22302 0.88178 1.01523 1.00100 1.62177 1.06974 1.14789 1.43417 1.22254 0.96371 0.88425 1.00078 1.22011 0.91816 1.00260 0.92129 1.62243 1.11742 1.09767 1.41114 1.19790 0.80003 0.97987 0.95634 1.21115 0.91226 0.93433 1.48365 0.92023 1.24971 0.96849 0.97218 0.95588 1.69942 1.02103 1.31183 1.50864 0.86568 0.77393 0.84686 0.78799 1.21400 1.20317 1.20212 1.21626 0.93708 0.91871 0.95118 0.93515 1.22283 0.98744 0.93466 0.85096 1.86608 1.75346 1.58734 1.14970 1.22049 0.94629 0.97202 0.91958 0.91801 0.91904 0.95945 0.94310 0.91284 0.89428 0.95469 0.99454 0.94573 0.92951 0.94640 0.92206 0.78884 0.93166 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 60.07 0.58 0.93 16 2 N -0.55 -9.02 4.97 -242.76 -1.21 -10.23 16 3 C 0.06 0.98 5.62 -3.77 -0.02 0.96 16 4 C 0.07 1.38 5.42 -3.77 -0.02 1.36 16 5 N -0.52 -11.88 4.45 -227.92 -1.02 -12.90 16 6 C 0.19 5.06 4.47 -4.98 -0.02 5.04 16 7 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 8 H 0.06 1.75 7.03 -52.49 -0.37 1.39 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 11 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.09 1.67 2.35 -67.65 -0.16 1.51 16 16 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 17 C 0.08 1.45 6.35 37.16 0.24 1.69 16 18 O -0.55 -9.78 12.73 -35.23 -0.45 -10.23 16 19 C 0.07 1.19 4.75 -3.77 -0.02 1.17 16 20 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 25 H 0.09 1.92 6.70 -51.93 -0.35 1.57 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H -0.01 -0.35 8.13 -51.93 -0.42 -0.77 16 28 H 0.04 1.01 5.72 -51.93 -0.30 0.71 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.16 5.98 -51.93 -0.31 0.85 16 32 H 0.37 4.65 9.12 45.56 0.42 5.07 16 33 H 0.05 0.93 7.54 -51.93 -0.39 0.54 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -31.78 270.57 -7.35 -39.14 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.66 Total: -0.04 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 0.18 Total: -0.53 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.48 Total: -49.34 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.45 Total: -10.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.78 -7.35 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.422 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds