Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99867 * 2 1 4 4 C 1.53051 * 109.36286 * 183.18685 * 3 2 1 5 5 N 1.46958 * 109.36653 * 301.60034 * 4 3 2 6 6 C 1.46901 * 111.00064 * 183.18789 * 5 4 3 7 7 C 1.50698 * 109.47029 * 64.84957 * 6 5 4 8 8 H 1.07998 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00447 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00123 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47408 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.46863 * 299.99918 * 11 9 7 14 14 H 1.48499 * 109.47495 * 59.99682 * 11 9 7 15 15 C 1.46960 * 110.87962 * 59.31736 * 5 4 3 16 16 H 1.08999 * 109.48619 * 60.64873 * 15 5 4 17 17 C 1.53003 * 109.48768 * 180.71471 * 15 5 4 18 18 O 1.42897 * 109.47108 * 63.55722 * 17 15 5 19 19 C 1.46955 * 110.99691 * 123.80057 * 2 1 3 20 20 H 1.09006 * 109.46786 * 56.04882 * 1 2 3 21 21 H 1.08995 * 109.47125 * 176.04636 * 1 2 3 22 22 H 1.08999 * 109.47455 * 296.05154 * 1 2 3 23 23 H 1.08999 * 109.48792 * 63.22195 * 3 2 1 24 24 H 1.09001 * 109.48978 * 303.15197 * 3 2 1 25 25 H 1.08998 * 109.49256 * 181.62837 * 4 3 2 26 26 H 1.09004 * 109.50535 * 61.57718 * 4 3 2 27 27 H 1.08996 * 109.47287 * 304.84839 * 6 5 4 28 28 H 1.08999 * 109.46818 * 184.84907 * 6 5 4 29 29 H 0.96997 * 120.00545 * 180.02562 * 10 9 7 30 30 H 1.08992 * 109.46675 * 183.55907 * 17 15 5 31 31 H 1.09004 * 109.46889 * 303.56207 * 17 15 5 32 32 H 0.96698 * 113.99793 * 179.97438 * 18 17 15 33 33 H 1.09003 * 109.49004 * 296.77366 * 19 2 1 34 34 H 1.08998 * 109.49540 * 56.82320 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.0214 1.9705 1.2735 8 1 5.3196 2.7821 1.3965 9 6 7.3769 2.2196 1.3108 10 7 8.2316 1.2314 1.1605 11 14 7.9996 3.9606 1.5764 12 1 9.4846 3.9609 1.5751 13 1 7.5040 4.8357 0.4837 14 1 7.5053 4.4697 2.8809 15 6 3.5234 -0.8061 1.0598 16 1 3.8253 -1.3115 0.1425 17 6 4.0769 -1.5654 2.2674 18 8 3.6113 -0.9510 3.4706 19 6 1.9956 -0.7632 1.1401 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 -0.3634 0.4513 0.9232 23 1 1.6937 1.8773 0.9174 24 1 1.6013 1.9128 -0.8603 25 1 3.9178 2.3448 -0.0513 26 1 3.8256 0.8481 -1.0106 27 1 5.8824 0.1917 0.1027 28 1 5.8824 -0.0760 1.8624 29 1 9.1852 1.4067 1.1872 30 1 3.7369 -2.6003 2.2327 31 1 5.1664 -1.5397 2.2444 32 1 3.9235 -1.3814 4.2782 33 1 1.6937 -0.2820 2.0704 34 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -59.708272 kcal Electronic energy + Delta-G solvation = -15255.403237 eV Core-core repulsion = 12801.356594 eV Total energy + Delta-G solvation = -2454.046644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47194 -37.51502 -36.44442 -34.51312 -32.41768 -30.39619 -27.73099 -27.23549 -25.09873 -23.47265 -22.40068 -20.49265 -18.56831 -18.20449 -17.10870 -16.70593 -16.29520 -15.74780 -15.64468 -15.12767 -14.81225 -14.55939 -14.12096 -13.98752 -13.46689 -12.95916 -12.91575 -12.67555 -12.65030 -12.38845 -12.27218 -12.06072 -11.86883 -11.27772 -11.16378 -10.77177 -10.52387 -9.32350 -8.95776 -8.20219 -6.29335 1.39807 1.43221 1.51090 2.40033 3.00387 3.11208 3.21173 3.52531 3.94707 4.06074 4.20465 4.31367 4.43972 4.46064 4.51507 4.66641 4.67032 4.78560 4.86094 4.97323 5.01596 5.06617 5.08535 5.26351 5.32157 5.64527 6.01167 6.08070 6.12597 6.38537 6.66298 6.85683 7.02667 7.39501 8.90801 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035672 B = 0.009078 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.748375 B = 3083.594109 C = 3567.205535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.559 5.559 3 C 0.068 3.932 4 C 0.066 3.934 5 N -0.532 5.532 6 C 0.208 3.792 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.968 3.032 12 H -0.281 1.281 13 H -0.268 1.268 14 H -0.270 1.270 15 C 0.077 3.923 16 H 0.039 0.961 17 C 0.088 3.912 18 O -0.571 6.571 19 C 0.081 3.919 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.016 0.984 27 H -0.046 1.046 28 H 0.018 0.982 29 H 0.264 0.736 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.387 0.613 33 H 0.036 0.964 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -4.288 0.046 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.284 5.284 3 C -0.060 4.060 4 C -0.063 4.063 5 N -0.257 5.257 6 C 0.082 3.918 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.206 1.206 13 H -0.193 1.193 14 H -0.195 1.195 15 C -0.033 4.033 16 H 0.056 0.944 17 C 0.009 3.991 18 O -0.378 6.378 19 C -0.047 4.047 20 H 0.098 0.902 21 H 0.100 0.900 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.034 0.966 27 H -0.028 1.028 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.235 0.765 33 H 0.054 0.946 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.813 -3.932 -0.391 13.408 hybrid contribution 1.230 0.312 0.435 1.342 sum -11.583 -3.620 0.044 12.135 Atomic orbital electron populations 1.22397 0.85448 1.03162 1.00946 1.62189 1.09388 1.13804 1.43013 1.22117 0.93454 0.89572 1.00878 1.22009 0.94587 0.98721 0.90974 1.62193 1.09201 1.12311 1.42030 1.19423 0.82714 0.96631 0.93017 1.21409 0.91747 0.94218 1.48717 0.92388 1.25880 0.96960 1.01715 0.94973 1.70067 1.02483 1.33485 1.51417 0.85457 0.76967 0.79273 0.79039 1.20615 1.19269 1.19519 1.21838 0.95741 0.89962 0.95715 0.94351 1.22188 0.96975 0.95240 0.84663 1.86541 1.75469 1.59823 1.15957 1.21947 0.92460 0.98756 0.91563 0.90187 0.90049 0.95697 0.95062 0.88653 0.91337 0.96610 1.02844 0.96390 0.92677 0.90525 0.95075 0.76460 0.94594 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.60 127.69 1.23 1.85 16 2 N -0.56 -17.08 4.97 -921.94 -4.58 -21.66 16 3 C 0.07 2.27 5.62 86.31 0.49 2.75 16 4 C 0.07 2.77 5.42 86.31 0.47 3.24 16 5 N -0.53 -24.70 4.45 -875.01 -3.90 -28.60 16 6 C 0.21 11.53 4.47 85.56 0.38 11.91 16 7 C -0.52 -30.69 8.46 25.60 0.22 -30.47 16 8 H 0.06 3.37 7.03 -2.91 -0.02 3.35 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 11 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 C 0.08 2.95 2.35 44.92 0.11 3.06 16 16 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 17 C 0.09 3.04 6.35 71.98 0.46 3.49 16 18 O -0.57 -19.71 12.73 -148.98 -1.90 -21.60 16 19 C 0.08 2.59 4.75 86.31 0.41 3.00 16 20 H 0.08 1.54 8.13 -2.38 -0.02 1.52 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.10 2.66 8.13 -2.39 -0.02 2.65 16 25 H 0.07 3.09 6.70 -2.39 -0.02 3.08 16 26 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 27 H -0.05 -2.79 8.13 -2.39 -0.02 -2.81 16 28 H 0.02 1.06 5.72 -2.39 -0.01 1.05 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.25 5.98 -2.38 -0.01 1.23 16 32 H 0.39 9.39 9.12 -74.06 -0.68 8.71 16 33 H 0.04 1.27 7.54 -2.39 -0.02 1.25 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -69.17 270.57 -3.45 -72.62 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.40 Total: 9.27 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.21 Total: -0.55 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -8.19 Total: -107.01 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.90 Total: -21.60 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.17 -3.45 -72.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.909 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds