Wall clock time and date at job start Mon Mar 30 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46959 * 111.00230 * 2 1 4 4 C 1.53045 * 109.36623 * 176.81135 * 3 2 1 5 5 N 1.46948 * 109.36512 * 58.40548 * 4 3 2 6 6 C 1.46901 * 111.00074 * 176.81112 * 5 4 3 7 7 C 1.50696 * 109.47067 * 295.10081 * 6 5 4 8 8 H 1.07995 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00140 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00009 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99800 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47218 * 90.00535 * 11 9 7 13 13 H 1.48502 * 109.47327 * 210.00553 * 11 9 7 14 14 H 1.48505 * 109.47232 * 330.00785 * 11 9 7 15 15 C 1.46954 * 110.88026 * 300.67651 * 5 4 3 16 16 H 1.08998 * 109.49296 * 299.35762 * 15 5 4 17 17 C 1.52999 * 109.49123 * 179.31015 * 15 5 4 18 18 O 1.42901 * 109.47178 * 296.49426 * 17 15 5 19 19 C 1.46958 * 111.00119 * 236.20420 * 2 1 3 20 20 H 1.09005 * 109.46890 * 56.04521 * 1 2 3 21 21 H 1.08997 * 109.46935 * 296.04391 * 1 2 3 22 22 H 1.08999 * 109.46506 * 176.04273 * 1 2 3 23 23 H 1.08996 * 109.49059 * 296.78537 * 3 2 1 24 24 H 1.09004 * 109.48408 * 56.82154 * 3 2 1 25 25 H 1.09006 * 109.48396 * 178.37258 * 4 3 2 26 26 H 1.09002 * 109.48982 * 298.40995 * 4 3 2 27 27 H 1.09001 * 109.46944 * 55.09884 * 6 5 4 28 28 H 1.09005 * 109.47355 * 175.09589 * 6 5 4 29 29 H 0.97007 * 119.99772 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.47247 * 56.49337 * 17 15 5 31 31 H 1.08999 * 109.47155 * 176.49386 * 17 15 5 32 32 H 0.96706 * 114.00084 * 179.97438 * 18 17 15 33 33 H 1.09003 * 109.48585 * 303.15248 * 19 2 1 34 34 H 1.09000 * 109.48811 * 63.22118 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 7 4.0501 0.5660 -1.0598 6 6 5.5191 0.5660 -1.0598 7 6 6.0214 1.9704 -1.2745 8 1 5.3196 2.7818 -1.3990 9 6 7.3770 2.2195 -1.3132 10 7 7.8153 3.4452 -1.5001 11 14 8.5909 0.8160 -1.0985 12 1 8.9122 0.2321 -2.4256 13 1 9.8344 1.3288 -0.4692 14 1 7.9911 -0.2288 -0.2302 15 6 3.5235 -0.8060 -1.0598 16 1 3.8253 -1.3114 -0.1425 17 6 4.0774 -1.5653 -2.2670 18 8 3.6132 -0.9504 -3.4705 19 6 1.9957 -0.7631 -1.1401 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 0.4512 0.9233 22 1 -0.3632 -1.0252 -0.0709 23 1 1.6938 1.8774 -0.9173 24 1 1.6010 1.9129 0.8601 25 1 3.9177 2.3449 0.0513 26 1 3.8254 0.8483 1.0108 27 1 5.8824 0.1926 -0.1023 28 1 5.8825 -0.0766 -1.8618 29 1 8.7691 3.6204 -1.5269 30 1 5.1669 -1.5405 -2.2432 31 1 3.7368 -2.6002 -2.2329 32 1 3.9265 -1.3804 -4.2781 33 1 1.6014 -1.7789 -1.1111 34 1 1.6938 -0.2819 -2.0704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:48 Heat of formation + Delta-G solvation = -56.486491 kcal Electronic energy + Delta-G solvation = -15303.386400 eV Core-core repulsion = 12849.479463 eV Total energy + Delta-G solvation = -2453.906937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51665 -37.52165 -36.48480 -34.52518 -32.44015 -30.83022 -27.94150 -27.25260 -24.96088 -23.25022 -22.35597 -20.52730 -18.98892 -18.23053 -17.06477 -16.80432 -16.19955 -15.74431 -15.65392 -15.12267 -14.99884 -14.54972 -14.42327 -14.04461 -13.61068 -13.00304 -12.98695 -12.69861 -12.63333 -12.31970 -12.23662 -11.94497 -11.80265 -11.38183 -11.24551 -10.83735 -10.64361 -9.34604 -8.97534 -8.28452 -6.31269 1.32350 1.34860 1.45442 2.33630 2.98405 3.03184 3.12843 3.52646 3.93250 4.03932 4.16658 4.29178 4.42356 4.45660 4.50357 4.63495 4.65189 4.74321 4.79654 4.88739 4.95717 5.01072 5.03226 5.11473 5.20624 5.54323 5.94881 6.01750 6.14704 6.37705 6.67786 6.73926 7.05150 7.31536 8.88443 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036288 B = 0.009672 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.426184 B = 2894.207551 C = 3331.579205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.555 5.555 3 C 0.068 3.932 4 C 0.068 3.932 5 N -0.533 5.533 6 C 0.173 3.827 7 C -0.514 4.514 8 H 0.033 0.967 9 C 0.007 3.993 10 N -0.949 5.949 11 Si 0.948 3.052 12 H -0.262 1.262 13 H -0.281 1.281 14 H -0.252 1.252 15 C 0.074 3.926 16 H 0.051 0.949 17 C 0.084 3.916 18 O -0.575 6.575 19 C 0.077 3.923 20 H 0.022 0.978 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.026 0.974 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.026 0.974 27 H -0.019 1.019 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.388 0.612 33 H 0.097 0.903 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 -12.871 1.295 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.280 5.280 3 C -0.061 4.061 4 C -0.061 4.061 5 N -0.258 5.258 6 C 0.046 3.954 7 C -0.552 4.552 8 H 0.052 0.948 9 C -0.190 4.190 10 N -0.590 5.590 11 Si 0.771 3.229 12 H -0.187 1.187 13 H -0.206 1.206 14 H -0.176 1.176 15 C -0.035 4.035 16 H 0.068 0.932 17 C 0.005 3.995 18 O -0.381 6.381 19 C -0.051 4.051 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.044 0.956 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.044 0.956 27 H -0.001 1.001 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.307 -12.373 1.710 16.849 hybrid contribution 1.236 -0.146 -0.393 1.306 sum -10.071 -12.519 1.317 16.121 Atomic orbital electron populations 1.22405 0.85551 1.02821 1.01257 1.62218 1.09309 1.13492 1.42957 1.22091 0.93589 0.89740 1.00642 1.21965 0.94499 0.98475 0.91149 1.61982 1.08509 1.12768 1.42523 1.19969 0.85129 0.95908 0.94379 1.21233 0.92004 0.93551 1.48429 0.94842 1.25863 1.00348 0.98376 0.94458 1.70056 1.15051 1.21908 1.51956 0.85710 0.78089 0.79602 0.79521 1.18717 1.20618 1.17554 1.21921 0.95696 0.89447 0.96392 0.93169 1.22274 0.97328 0.95416 0.84466 1.86582 1.75635 1.59828 1.16089 1.21996 0.92770 0.98816 0.91490 0.95911 0.90244 0.89848 0.95591 0.88845 0.92270 0.95593 1.00095 0.94596 0.92435 0.94213 0.90109 0.76343 0.88476 0.94903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.63 127.69 1.23 1.82 16 2 N -0.56 -16.36 4.97 -921.92 -4.58 -20.94 16 3 C 0.07 2.28 5.62 86.31 0.48 2.76 16 4 C 0.07 2.83 5.42 86.31 0.47 3.29 16 5 N -0.53 -23.57 4.45 -875.05 -3.90 -27.46 16 6 C 0.17 8.61 3.54 85.56 0.30 8.92 16 7 C -0.51 -30.77 9.02 25.60 0.23 -30.53 16 8 H 0.03 2.25 7.28 -2.91 -0.02 2.23 16 9 C 0.01 0.39 5.47 84.66 0.46 0.85 16 10 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 11 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 15 C 0.07 2.59 2.35 44.92 0.11 2.70 16 16 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 17 C 0.08 2.50 6.35 71.98 0.46 2.96 16 18 O -0.57 -18.18 12.74 -148.98 -1.90 -20.08 16 19 C 0.08 2.33 4.74 86.31 0.41 2.74 16 20 H 0.02 0.50 8.14 -2.38 -0.02 0.49 16 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.08 1.49 8.07 -2.39 -0.02 1.48 16 23 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.06 2.82 6.70 -2.38 -0.02 2.81 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H -0.02 -0.93 7.19 -2.39 -0.02 -0.94 16 28 H 0.04 1.74 5.14 -2.38 -0.01 1.73 16 29 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 30 H 0.04 1.29 5.98 -2.39 -0.01 1.28 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.39 8.26 9.12 -74.05 -0.68 7.58 16 33 H 0.10 2.33 8.09 -2.39 -0.02 2.31 16 34 H 0.03 1.12 7.54 -2.39 -0.02 1.10 16 Total: -1.00 -71.93 266.90 -3.69 -75.63 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.35 Total: 11.06 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.15 Total: -4.49 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -8.18 Total: -108.57 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.90 Total: -20.08 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -71.93 -3.69 -75.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.140 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds