Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 113.99719 * 2 1 4 4 C 1.53005 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47308 * 54.48243 * 4 3 2 6 6 C 1.50704 * 109.47191 * 294.48016 * 4 3 2 7 7 H 1.08005 * 119.99777 * 120.29410 * 6 4 3 8 8 C 1.37873 * 119.99926 * 300.29881 * 6 4 3 9 9 N 1.31510 * 120.00134 * 1.43972 * 8 6 4 10 10 Si 1.86799 * 119.99864 * 181.44468 * 8 6 4 11 11 H 1.48497 * 109.47272 * 269.99397 * 10 8 6 12 12 H 1.48496 * 109.47235 * 29.99416 * 10 8 6 13 13 H 1.48500 * 109.47313 * 149.99610 * 10 8 6 14 14 C 1.52996 * 109.47318 * 174.48200 * 4 3 2 15 15 C 1.53182 * 109.54119 * 304.86701 * 14 4 3 16 16 C 1.53102 * 109.15562 * 183.23991 * 15 14 4 17 17 O 1.42911 * 109.48963 * 57.47172 * 16 15 14 18 18 C 1.42897 * 114.09626 * 298.89152 * 17 16 15 19 19 C 1.53093 * 109.41753 * 61.15416 * 18 17 16 20 20 H 1.08998 * 109.47393 * 300.00024 * 1 2 3 21 21 H 1.09002 * 109.47118 * 60.00032 * 1 2 3 22 22 H 1.09000 * 109.47492 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47380 * 60.00487 * 3 2 1 24 24 H 1.09000 * 109.46958 * 299.99456 * 3 2 1 25 25 H 0.96999 * 120.00055 * 354.45261 * 9 8 6 26 26 H 1.09001 * 109.54382 * 65.03989 * 14 4 3 27 27 H 1.08998 * 109.52051 * 303.05567 * 15 14 4 28 28 H 1.08996 * 109.52635 * 63.24393 * 15 14 4 29 29 H 1.09003 * 109.41116 * 297.49127 * 16 15 14 30 30 H 1.08998 * 109.49100 * 177.50458 * 16 15 14 31 31 H 1.09007 * 109.48083 * 301.17301 * 18 17 16 32 32 H 1.08996 * 109.48261 * 181.13937 * 18 17 16 33 33 H 1.09001 * 109.52109 * 182.48444 * 19 18 17 34 34 H 1.08999 * 109.57352 * 62.32884 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5608 -0.8355 6 6 3.9891 0.5584 1.2941 7 1 4.5425 -0.3691 1.2800 8 6 3.6978 1.1692 2.4953 9 7 2.9996 2.2835 2.5141 10 14 4.2950 0.4141 4.0961 11 1 3.2701 -0.5290 4.6112 12 1 5.5644 -0.3179 3.8549 13 1 4.5253 1.4887 5.0948 14 6 4.1572 2.5757 -0.1381 15 6 3.6030 3.2622 -1.3903 16 6 4.2903 4.6190 -1.5652 17 8 5.7044 4.4299 -1.6491 18 6 6.2835 3.8357 -0.4857 19 6 5.6779 2.4465 -0.2685 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 2.7584 2.7188 1.6815 26 1 3.9161 3.1723 0.7417 27 1 3.7995 2.6404 -2.2637 28 1 2.5284 3.4082 -1.2803 29 1 4.0588 5.2552 -0.7110 30 1 3.9322 5.0930 -2.4791 31 1 6.0780 4.4616 0.3828 32 1 7.3611 3.7452 -0.6218 33 1 6.0859 2.0097 0.6430 34 1 5.9176 1.8068 -1.1179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = -99.237810 kcal Electronic energy + Delta-G solvation = -15515.684834 eV Core-core repulsion = 13027.631310 eV Total energy + Delta-G solvation = -2488.053524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02524 -37.09570 -35.04658 -31.96905 -30.55873 -28.81391 -26.01825 -24.83811 -23.71182 -22.61390 -20.48417 -18.95593 -17.20013 -15.94009 -15.47139 -15.02107 -14.80115 -14.30734 -14.15838 -13.77609 -13.26057 -12.96369 -12.54079 -12.01163 -11.67691 -11.35837 -10.91869 -10.77458 -10.69355 -10.64615 -10.39983 -10.10099 -9.93686 -9.65016 -9.32461 -8.99003 -8.78859 -8.33840 -8.12925 -6.18953 -4.01179 3.45661 3.47099 3.63014 4.33001 4.55010 4.77777 5.32904 5.45435 5.53707 5.60724 5.75146 5.80068 5.85051 5.93416 6.00241 6.05783 6.15943 6.19295 6.31082 6.47771 6.52084 6.60474 6.71922 6.94350 7.02868 7.09203 7.27262 7.52202 7.66160 8.15764 8.34027 8.45443 8.90428 9.65619 11.04057 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.013406 C = 0.009413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.335031 B = 2088.174270 C = 2973.997717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.054 3.946 4 C 0.038 3.962 5 H 0.031 0.969 6 C -0.567 4.567 7 H 0.048 0.952 8 C 0.023 3.977 9 N -0.924 5.924 10 Si 1.063 2.937 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.286 1.286 14 C -0.091 4.091 15 C -0.156 4.156 16 C 0.063 3.937 17 O -0.393 6.393 18 C 0.060 3.940 19 C -0.130 4.130 20 H 0.033 0.967 21 H 0.025 0.975 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.012 0.988 25 H 0.274 0.726 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 2.526 -4.947 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.023 4.023 4 C 0.019 3.981 5 H 0.050 0.950 6 C -0.605 4.605 7 H 0.066 0.934 8 C -0.179 4.179 9 N -0.566 5.566 10 Si 0.892 3.108 11 H -0.216 1.216 12 H -0.215 1.215 13 H -0.212 1.212 14 C -0.110 4.110 15 C -0.194 4.194 16 C -0.014 4.014 17 O -0.312 6.312 18 C -0.017 4.017 19 C -0.168 4.168 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.030 0.970 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.384 2.577 -3.458 4.330 hybrid contribution -0.485 -0.105 -1.408 1.493 sum -0.100 2.471 -4.867 5.459 Atomic orbital electron populations 1.22565 0.83895 1.01113 0.98762 1.87918 1.16986 1.29533 1.95080 1.23109 0.97623 0.83273 0.98304 1.18853 0.89011 0.92383 0.97850 0.95044 1.21792 1.37888 1.09229 0.91599 0.93405 1.25619 0.94331 0.95925 1.02004 1.70890 1.35671 1.18569 1.31466 0.83630 0.76071 0.75514 0.75563 1.21583 1.21525 1.21190 1.21390 0.94253 0.99085 0.96273 1.22403 0.99977 0.96794 1.00194 1.22536 0.81302 0.96644 1.00875 1.87811 1.21160 1.82024 1.40213 1.22652 0.97127 0.94327 0.87581 1.21993 0.96700 0.95627 1.02453 0.94862 0.95691 0.90942 0.91619 0.96967 0.90913 0.89443 0.92086 0.91628 0.93642 0.89997 0.93591 0.89829 0.89985 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 101.05 1.11 1.75 16 2 O -0.38 -9.05 10.47 -35.23 -0.37 -9.41 16 3 C 0.05 1.28 4.70 37.16 0.17 1.45 16 4 C 0.04 0.94 1.92 -91.77 -0.18 0.76 16 5 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.57 -15.55 7.55 -34.44 -0.26 -15.81 16 7 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 8 C 0.02 0.64 5.12 -17.82 -0.09 0.55 16 9 N -0.92 -26.18 12.17 55.43 0.67 -25.51 16 10 Si 1.06 24.98 29.90 -169.99 -5.08 19.90 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 C -0.09 -1.99 1.55 -90.44 -0.14 -2.13 16 15 C -0.16 -2.91 4.84 -26.58 -0.13 -3.04 16 16 C 0.06 1.06 6.84 37.21 0.25 1.31 16 17 O -0.39 -7.15 10.77 -35.23 -0.38 -7.52 16 18 C 0.06 1.05 6.84 37.21 0.25 1.31 16 19 C -0.13 -2.63 5.18 -26.59 -0.14 -2.77 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.07 1.71 5.18 -51.93 -0.27 1.44 16 24 H 0.01 0.27 6.11 -51.93 -0.32 -0.05 16 25 H 0.27 7.52 3.49 -40.82 -0.14 7.38 16 26 H 0.09 2.13 5.26 -51.93 -0.27 1.86 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -29.63 263.40 -5.48 -35.11 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.16 Total: 0.09 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 0.86 Total: -16.62 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.67 Total: -25.51 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.75 Total: -16.94 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.63 -5.48 -35.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.128 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds