Wall clock time and date at job start Mon Mar 30 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00189 * 2 1 4 4 C 1.52998 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47080 * 174.31240 * 4 3 2 6 6 C 1.50703 * 109.47142 * 54.31081 * 4 3 2 7 7 H 1.07997 * 119.99685 * 244.59589 * 6 4 3 8 8 C 1.37874 * 119.99639 * 64.59135 * 6 4 3 9 9 N 1.31517 * 120.00634 * 6.85213 * 8 6 4 10 10 Si 1.86806 * 119.99728 * 186.84660 * 8 6 4 11 11 H 1.48507 * 109.46600 * 84.98305 * 10 8 6 12 12 H 1.48498 * 109.47420 * 204.97961 * 10 8 6 13 13 H 1.48495 * 109.47167 * 324.98536 * 10 8 6 14 14 N 1.46903 * 109.47015 * 294.31061 * 4 3 2 15 15 C 1.47894 * 110.99830 * 69.87501 * 14 4 3 16 16 C 1.53999 * 107.05877 * 145.84335 * 15 14 4 17 17 C 1.54598 * 105.13516 * 358.77240 * 16 15 14 18 18 H 1.08995 * 110.72482 * 96.40406 * 17 16 15 19 19 N 1.46911 * 110.72090 * 219.68334 * 17 16 15 20 20 C 1.48537 * 110.99728 * 187.26805 * 14 4 3 21 21 H 1.08995 * 109.46900 * 300.00096 * 1 2 3 22 22 H 1.09007 * 109.47100 * 60.00006 * 1 2 3 23 23 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46981 * 59.99778 * 3 2 1 25 25 H 1.09005 * 109.47512 * 300.00708 * 3 2 1 26 26 H 0.96997 * 120.00029 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.92106 * 26.48645 * 15 14 4 28 28 H 1.09003 * 109.91408 * 265.19139 * 15 14 4 29 29 H 1.08998 * 110.30695 * 117.68632 * 16 15 14 30 30 H 1.08999 * 110.30973 * 239.85676 * 16 15 14 31 31 H 1.00901 * 110.99750 * 298.55132 * 19 17 16 32 32 H 1.00899 * 110.99748 * 62.50213 * 19 17 16 33 33 H 1.09000 * 110.66719 * 318.71408 * 20 14 4 34 34 H 1.09001 * 110.66416 * 81.84398 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1754 -0.1012 6 6 3.9713 0.3185 -1.1530 7 1 4.4563 -0.6279 -0.9646 8 6 3.7507 0.7342 -2.4489 9 7 3.2844 1.9417 -2.6819 10 14 4.1143 -0.4176 -3.8740 11 1 2.9431 -1.3001 -4.1082 12 1 4.3863 0.3790 -5.0974 13 1 5.3022 -1.2472 -3.5492 14 7 3.9780 0.5778 1.2631 15 6 3.5930 -0.8486 1.3292 16 6 4.7078 -1.5824 2.0975 17 6 5.7532 -0.4931 2.4300 18 1 5.6020 -0.1085 3.4386 19 7 7.1170 -1.0154 2.2703 20 6 5.4590 0.6031 1.3754 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8465 -0.8899 26 1 3.1296 2.2342 -3.5937 27 1 3.5053 -1.2566 0.3223 28 1 2.6461 -0.9534 1.8589 29 1 4.3114 -2.0187 3.0142 30 1 5.1531 -2.3555 1.4713 31 1 7.2853 -1.7854 2.9003 32 1 7.2908 -1.2860 1.3140 33 1 5.9215 0.3525 0.4208 34 1 5.8016 1.5765 1.7264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:09 Heat of formation + Delta-G solvation = -35.903571 kcal Electronic energy + Delta-G solvation = -15500.968548 eV Core-core repulsion = 13047.954153 eV Total energy + Delta-G solvation = -2453.014394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.54945 -36.53617 -33.98699 -32.22883 -29.78810 -27.97705 -26.05474 -25.43607 -24.50502 -21.32259 -19.99922 -19.29144 -16.63309 -15.81952 -15.59021 -14.97308 -14.41353 -14.26804 -13.98415 -13.64978 -12.89128 -12.70020 -12.33031 -12.12822 -11.56331 -11.35147 -10.95301 -10.82105 -10.70359 -10.46832 -10.39945 -10.06990 -9.94591 -9.69639 -9.27853 -8.57260 -8.34779 -8.30874 -7.16272 -6.02781 -4.07654 3.29509 3.35442 3.37814 4.41913 4.80737 4.99485 5.24160 5.28079 5.36666 5.61762 5.68599 5.98610 6.06203 6.10914 6.22474 6.25282 6.30001 6.56918 6.65692 6.81610 6.90830 6.92946 7.09673 7.20333 7.41733 7.47748 7.70728 7.85591 8.02122 8.14605 8.30780 8.50367 8.95205 9.56638 11.01704 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.013121 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.547583 B = 2133.514627 C = 2778.075658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.083 3.917 4 C 0.202 3.798 5 H 0.057 0.943 6 C -0.524 4.524 7 H 0.060 0.940 8 C 0.070 3.930 9 N -0.893 5.893 10 Si 0.888 3.112 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.519 5.519 15 C 0.048 3.952 16 C -0.167 4.167 17 C 0.085 3.915 18 H 0.084 0.916 19 N -0.843 5.843 20 C 0.049 3.951 21 H 0.024 0.976 22 H 0.028 0.972 23 H 0.068 0.932 24 H 0.013 0.987 25 H 0.063 0.937 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.334 0.666 32 H 0.340 0.660 33 H 0.057 0.943 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -4.523 6.390 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.006 3.994 4 C 0.095 3.905 5 H 0.075 0.925 6 C -0.562 4.562 7 H 0.078 0.922 8 C -0.132 4.132 9 N -0.532 5.532 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.202 1.202 14 N -0.243 5.243 15 C -0.080 4.080 16 C -0.207 4.207 17 C -0.027 4.027 18 H 0.102 0.898 19 N -0.371 5.371 20 C -0.079 4.079 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.086 0.914 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.075 0.925 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.035 -3.509 6.881 7.724 hybrid contribution -0.347 -1.734 -1.917 2.608 sum -0.312 -5.243 4.964 7.227 Atomic orbital electron populations 1.22521 0.84651 1.00693 0.98526 1.87994 1.16250 1.29556 1.95008 1.22590 0.96118 0.82940 0.97749 1.19473 0.89769 0.96254 0.85017 0.92490 1.21450 1.38759 1.05014 0.91004 0.92231 1.24863 0.94932 0.94724 0.98704 1.69901 1.45899 1.16783 1.20579 0.86675 0.78585 0.81085 0.82019 1.20618 1.21415 1.20162 1.65055 1.08525 1.14376 1.36344 1.22715 0.95755 0.89012 1.00552 1.23302 0.99005 0.98563 0.99860 1.22424 0.85624 0.94763 0.99929 0.89811 1.58868 1.26565 1.40603 1.11087 1.23004 0.90421 0.97353 0.97149 0.95753 0.95310 0.91381 0.96904 0.91881 0.92905 0.90696 0.92075 0.92576 0.92759 0.85473 0.84704 0.92510 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 101.05 1.11 1.73 16 2 O -0.37 -8.45 7.60 -35.23 -0.27 -8.72 16 3 C 0.08 1.98 5.49 37.16 0.20 2.19 16 4 C 0.20 5.02 2.20 -68.86 -0.15 4.87 16 5 H 0.06 1.55 8.10 -51.93 -0.42 1.13 16 6 C -0.52 -13.90 5.89 -34.44 -0.20 -14.10 16 7 H 0.06 1.60 6.00 -52.49 -0.32 1.29 16 8 C 0.07 1.90 5.26 -17.82 -0.09 1.81 16 9 N -0.89 -25.06 12.02 55.43 0.67 -24.40 16 10 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 N -0.52 -11.32 5.25 -223.88 -1.18 -12.50 16 15 C 0.05 0.99 4.72 -2.76 -0.01 0.97 16 16 C -0.17 -2.81 6.66 -25.37 -0.17 -2.98 16 17 C 0.08 1.40 4.22 -65.85 -0.28 1.13 16 18 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 19 N -0.84 -12.15 9.33 -3.09 -0.03 -12.18 16 20 C 0.05 0.99 6.03 -1.90 -0.01 0.97 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 1.64 6.87 -51.93 -0.36 1.28 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.75 5.00 -51.93 -0.26 1.49 16 28 H 0.06 1.26 7.61 -51.93 -0.40 0.87 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.88 8.05 -51.93 -0.42 0.47 16 31 H 0.33 4.01 9.07 -39.29 -0.36 3.66 16 32 H 0.34 4.92 8.86 -39.29 -0.35 4.58 16 33 H 0.06 1.24 6.78 -51.93 -0.35 0.89 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -27.93 268.20 -6.70 -34.64 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.32 Total: 6.19 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 0.40 Total: -3.41 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.54 Total: -49.08 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.27 Total: -8.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.93 -6.70 -34.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.265 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds