Wall clock time and date at job start Mon Mar 30 2020 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00189 * 2 1 4 4 C 1.52998 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47080 * 174.31240 * 4 3 2 6 6 C 1.50703 * 109.47142 * 54.31081 * 4 3 2 7 7 H 1.07997 * 119.99685 * 244.59589 * 6 4 3 8 8 C 1.37874 * 119.99639 * 64.59135 * 6 4 3 9 9 N 1.31517 * 120.00634 * 6.85213 * 8 6 4 10 10 Si 1.86806 * 119.99728 * 186.84660 * 8 6 4 11 11 H 1.48507 * 109.46600 * 84.98305 * 10 8 6 12 12 H 1.48498 * 109.47420 * 204.97961 * 10 8 6 13 13 H 1.48495 * 109.47167 * 324.98536 * 10 8 6 14 14 N 1.46903 * 109.47015 * 294.31061 * 4 3 2 15 15 C 1.47894 * 110.99830 * 69.87501 * 14 4 3 16 16 C 1.53999 * 107.05877 * 145.84335 * 15 14 4 17 17 C 1.54598 * 105.13516 * 358.77240 * 16 15 14 18 18 H 1.08995 * 110.72482 * 96.40406 * 17 16 15 19 19 N 1.46911 * 110.72090 * 219.68334 * 17 16 15 20 20 C 1.48537 * 110.99728 * 187.26805 * 14 4 3 21 21 H 1.08995 * 109.46900 * 300.00096 * 1 2 3 22 22 H 1.09007 * 109.47100 * 60.00006 * 1 2 3 23 23 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46981 * 59.99778 * 3 2 1 25 25 H 1.09005 * 109.47512 * 300.00708 * 3 2 1 26 26 H 0.96997 * 120.00029 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.92106 * 26.48645 * 15 14 4 28 28 H 1.09003 * 109.91408 * 265.19139 * 15 14 4 29 29 H 1.08998 * 110.30695 * 117.68632 * 16 15 14 30 30 H 1.08999 * 110.30973 * 239.85676 * 16 15 14 31 31 H 1.00901 * 110.99750 * 298.55132 * 19 17 16 32 32 H 1.00899 * 110.99748 * 62.50213 * 19 17 16 33 33 H 1.09000 * 110.66719 * 318.71408 * 20 14 4 34 34 H 1.09001 * 110.66416 * 81.84398 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1754 -0.1012 6 6 3.9713 0.3185 -1.1530 7 1 4.4563 -0.6279 -0.9646 8 6 3.7507 0.7342 -2.4489 9 7 3.2844 1.9417 -2.6819 10 14 4.1143 -0.4176 -3.8740 11 1 2.9431 -1.3001 -4.1082 12 1 4.3863 0.3790 -5.0974 13 1 5.3022 -1.2472 -3.5492 14 7 3.9780 0.5778 1.2631 15 6 3.5930 -0.8486 1.3292 16 6 4.7078 -1.5824 2.0975 17 6 5.7532 -0.4931 2.4300 18 1 5.6020 -0.1085 3.4386 19 7 7.1170 -1.0154 2.2703 20 6 5.4590 0.6031 1.3754 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8465 -0.8899 26 1 3.1296 2.2342 -3.5937 27 1 3.5053 -1.2566 0.3223 28 1 2.6461 -0.9534 1.8589 29 1 4.3114 -2.0187 3.0142 30 1 5.1531 -2.3555 1.4713 31 1 7.2853 -1.7854 2.9003 32 1 7.2908 -1.2860 1.3140 33 1 5.9215 0.3525 0.4208 34 1 5.8016 1.5765 1.7264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:09 Heat of formation + Delta-G solvation = -57.921741 kcal Electronic energy + Delta-G solvation = -15501.923327 eV Core-core repulsion = 13047.954153 eV Total energy + Delta-G solvation = -2453.969174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19979 -38.21917 -35.67879 -34.04398 -31.42585 -29.60904 -27.63135 -27.21297 -26.31389 -23.05170 -21.50706 -21.03107 -18.57190 -17.39429 -17.15981 -16.79371 -16.17913 -15.91499 -15.45810 -15.33083 -14.54261 -14.28781 -14.08067 -13.72691 -13.25979 -13.00113 -12.82565 -12.59045 -12.31511 -12.16574 -11.96147 -11.89951 -11.83694 -11.29684 -11.18044 -10.56460 -10.18458 -9.55459 -8.99183 -8.08394 -6.20048 1.36960 1.39430 1.46117 2.41274 3.17495 3.31395 3.39848 3.78094 3.91055 4.18584 4.27707 4.54329 4.59543 4.64269 4.72234 4.78052 4.83955 4.90844 4.99041 5.04697 5.15544 5.27542 5.37820 5.45701 5.51564 5.78494 6.07758 6.21511 6.33051 6.46991 6.65874 6.70771 6.91806 7.46278 8.93374 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.013121 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.547583 B = 2133.514627 C = 2778.075658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.388 6.388 3 C 0.096 3.904 4 C 0.204 3.796 5 H 0.024 0.976 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.023 3.977 9 N -0.920 5.920 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.271 1.271 14 N -0.520 5.520 15 C 0.052 3.948 16 C -0.157 4.157 17 C 0.100 3.900 18 H 0.095 0.905 19 N -0.840 5.840 20 C 0.047 3.953 21 H 0.044 0.956 22 H 0.025 0.975 23 H 0.094 0.906 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.352 0.648 32 H 0.341 0.659 33 H 0.032 0.968 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -6.066 7.448 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.307 6.307 3 C 0.019 3.981 4 C 0.096 3.904 5 H 0.042 0.958 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.176 4.176 9 N -0.560 5.560 10 Si 0.770 3.230 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.195 1.195 14 N -0.244 5.244 15 C -0.076 4.076 16 C -0.197 4.197 17 C -0.013 4.013 18 H 0.113 0.887 19 N -0.370 5.370 20 C -0.082 4.082 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.112 0.888 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.051 0.949 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.253 -5.074 7.958 9.442 hybrid contribution -0.442 -1.250 -2.199 2.568 sum -0.189 -6.325 5.759 8.556 Atomic orbital electron populations 1.22762 0.82162 1.02700 0.99297 1.87946 1.18996 1.28643 1.95123 1.22267 0.95537 0.83469 0.96864 1.19265 0.90493 0.94591 0.86079 0.95787 1.21600 1.38068 1.04678 0.91722 0.92880 1.25530 0.95235 0.95935 1.00943 1.70013 1.47046 1.18048 1.20856 0.85792 0.78409 0.79360 0.79398 1.20628 1.21121 1.19537 1.64990 1.09801 1.15350 1.34269 1.22616 0.97312 0.88290 0.99410 1.23250 0.97641 0.98330 1.00492 1.22235 0.86668 0.93402 0.98953 0.88703 1.58798 1.24892 1.41679 1.11656 1.23022 0.89108 0.98806 0.97279 0.93778 0.95669 0.88787 0.95873 0.94561 0.93023 0.93777 0.92172 0.89981 0.92102 0.83412 0.84631 0.94918 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.39 -17.59 7.60 -148.98 -1.13 -18.72 16 3 C 0.10 4.65 5.49 71.98 0.40 5.04 16 4 C 0.20 10.34 2.20 44.17 0.10 10.44 16 5 H 0.02 1.37 8.10 -2.38 -0.02 1.35 16 6 C -0.52 -28.14 5.89 25.60 0.15 -27.99 16 7 H 0.05 2.89 6.00 -2.91 -0.02 2.87 16 8 C 0.02 1.25 5.26 84.65 0.45 1.70 16 9 N -0.92 -52.76 12.02 21.45 0.26 -52.51 16 10 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 N -0.52 -22.62 5.25 -862.23 -4.53 -27.15 16 15 C 0.05 2.09 4.72 86.45 0.41 2.49 16 16 C -0.16 -4.85 6.66 31.48 0.21 -4.64 16 17 C 0.10 3.07 4.22 46.12 0.19 3.26 16 18 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 19 N -0.84 -21.98 9.33 -163.69 -1.53 -23.51 16 20 C 0.05 1.84 6.03 86.65 0.52 2.36 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.04 1.94 6.87 -2.38 -0.02 1.92 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 27 H 0.04 2.05 5.00 -2.39 -0.01 2.04 16 28 H 0.06 2.39 7.61 -2.39 -0.02 2.37 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 31 H 0.35 7.22 9.07 -89.69 -0.81 6.41 16 32 H 0.34 9.14 8.86 -89.70 -0.79 8.34 16 33 H 0.03 1.44 6.78 -2.39 -0.02 1.43 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -59.89 268.20 -1.74 -61.63 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.51 Total: 19.26 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 3.67 Total: -5.12 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -5.80 Total: -103.16 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.13 Total: -18.72 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.89 -1.74 -61.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.712 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds