Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00043 * 2 1 4 4 C 1.53000 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46949 * 184.99328 * 4 3 2 6 6 C 1.50694 * 109.47174 * 304.99858 * 4 3 2 7 7 H 1.08000 * 120.00563 * 119.99919 * 6 4 3 8 8 C 1.37885 * 119.99902 * 300.00082 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 N 1.46903 * 109.47120 * 64.99820 * 4 3 2 15 15 C 1.47846 * 110.99976 * 295.84635 * 14 4 3 16 16 C 1.54908 * 104.79420 * 213.63663 * 15 14 4 17 17 C 1.55146 * 101.65325 * 37.06697 * 16 15 14 18 18 H 1.09000 * 110.70648 * 82.72658 * 17 16 15 19 19 N 1.46893 * 110.85460 * 205.89286 * 17 16 15 20 20 C 1.47442 * 110.99796 * 175.00017 * 14 4 3 21 21 H 1.09005 * 109.47178 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47068 * 299.99976 * 1 2 3 23 23 H 1.08993 * 109.47475 * 60.00201 * 1 2 3 24 24 H 1.09001 * 109.47043 * 59.99550 * 3 2 1 25 25 H 1.09002 * 109.46855 * 299.99843 * 3 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 27 27 H 1.09004 * 110.37289 * 332.46170 * 15 14 4 28 28 H 1.08996 * 110.37949 * 94.80489 * 15 14 4 29 29 H 1.08994 * 110.99328 * 278.97765 * 16 15 14 30 30 H 1.09001 * 110.99002 * 155.15855 * 16 15 14 31 31 H 1.00896 * 111.00209 * 293.68565 * 19 17 16 32 32 H 1.00901 * 110.99927 * 57.64329 * 19 17 16 33 33 H 1.09001 * 109.88412 * 242.65793 * 20 14 4 34 34 H 1.08995 * 109.89228 * 3.85033 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0888 6 6 3.9723 0.3325 1.1629 7 1 4.5229 -0.5800 0.9873 8 6 3.6692 0.7176 2.4517 9 7 2.9992 1.8289 2.6655 10 14 4.2102 -0.3392 3.8939 11 1 3.1501 -1.3312 4.2058 12 1 5.4658 -1.0503 3.5430 13 1 4.4448 0.5239 5.0793 14 7 3.9769 0.5627 -1.2562 15 6 3.4751 -0.8237 -1.3657 16 6 4.5890 -1.5888 -2.1230 17 6 5.8697 -0.9335 -1.5423 18 1 6.1374 -1.3890 -0.5890 19 7 6.9846 -1.0312 -2.4938 20 6 5.4484 0.5379 -1.3447 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 2.7857 2.0996 3.5722 27 1 3.3263 -1.2528 -0.3748 28 1 2.5451 -0.8470 -1.9338 29 1 4.5171 -1.4205 -3.1975 30 1 4.5567 -2.6538 -1.8931 31 1 7.2637 -1.9917 -2.6263 32 1 6.7476 -0.5987 -3.3741 33 1 5.7789 1.1355 -2.1942 34 1 5.8820 0.9272 -0.4236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -36.338014 kcal Electronic energy + Delta-G solvation = -15564.805036 eV Core-core repulsion = 13111.771803 eV Total energy + Delta-G solvation = -2453.033233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.58686 -36.46719 -33.90644 -32.23655 -29.73903 -27.94427 -25.91939 -25.55718 -24.39890 -21.22771 -20.12989 -19.25817 -16.54630 -16.04624 -15.42543 -14.88807 -14.48558 -14.21448 -13.95861 -13.49624 -12.90323 -12.52477 -12.35525 -12.03710 -11.59983 -11.17870 -10.97649 -10.83910 -10.67767 -10.59353 -10.30110 -10.05446 -9.94354 -9.84377 -9.12144 -8.55981 -8.31981 -8.22689 -7.11077 -5.97786 -4.06009 3.30758 3.37082 3.40123 4.43737 4.85106 5.04360 5.19932 5.31047 5.40734 5.60630 5.72483 6.02458 6.11105 6.15522 6.22746 6.29709 6.31667 6.62751 6.70511 6.80360 6.93265 6.97944 7.15831 7.29314 7.44985 7.50700 7.71439 7.90972 8.05972 8.25395 8.36356 8.54999 8.97304 9.59237 11.03801 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.013519 C = 0.010177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.778452 B = 2070.719176 C = 2750.703734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.077 3.923 4 C 0.206 3.794 5 H 0.051 0.949 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.068 3.932 9 N -0.894 5.894 10 Si 0.889 3.111 11 H -0.281 1.281 12 H -0.276 1.276 13 H -0.288 1.288 14 N -0.532 5.532 15 C 0.063 3.937 16 C -0.170 4.170 17 C 0.073 3.927 18 H 0.084 0.916 19 N -0.841 5.841 20 C 0.060 3.940 21 H 0.066 0.934 22 H 0.029 0.971 23 H 0.022 0.978 24 H 0.078 0.922 25 H 0.008 0.992 26 H 0.260 0.740 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.333 0.667 32 H 0.337 0.663 33 H 0.057 0.943 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -4.212 -6.915 8.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.288 6.288 3 C 0.000 4.000 4 C 0.099 3.901 5 H 0.069 0.931 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.133 4.133 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.201 1.201 13 H -0.214 1.214 14 N -0.257 5.257 15 C -0.066 4.066 16 C -0.210 4.210 17 C -0.040 4.040 18 H 0.102 0.898 19 N -0.369 5.369 20 C -0.069 4.069 21 H 0.085 0.915 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.096 0.904 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.076 0.924 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.367 -3.498 -6.624 7.500 hybrid contribution -0.456 -1.374 1.026 1.775 sum -0.088 -4.872 -5.599 7.422 Atomic orbital electron populations 1.22499 0.84804 1.00536 0.98475 1.87992 1.16143 1.29641 1.95022 1.22688 0.95907 0.83104 0.98286 1.19555 0.90000 0.95594 0.84998 0.93086 1.21525 1.35162 1.08096 0.91143 0.92388 1.24860 0.94810 0.94890 0.98748 1.69836 1.39987 1.22606 1.20950 0.86634 0.78941 0.80412 0.82239 1.20769 1.20054 1.21362 1.63934 1.07001 1.17464 1.37259 1.22825 0.95201 0.88369 1.00158 1.23571 0.98404 0.99311 0.99690 1.22744 0.87966 0.97751 0.95518 0.89786 1.58858 1.40300 1.21983 1.15714 1.22558 0.89541 0.93816 1.00998 0.91523 0.95264 0.95926 0.90387 0.97427 0.92974 0.90614 0.92116 0.92304 0.92364 0.85495 0.85091 0.92429 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 101.05 1.11 1.75 16 2 O -0.37 -8.52 7.18 -35.23 -0.25 -8.77 16 3 C 0.08 1.86 5.39 37.16 0.20 2.06 16 4 C 0.21 5.12 2.15 -68.87 -0.15 4.97 16 5 H 0.05 1.38 8.13 -51.93 -0.42 0.96 16 6 C -0.52 -13.83 5.97 -34.44 -0.21 -14.04 16 7 H 0.06 1.56 6.57 -52.49 -0.34 1.22 16 8 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 9 N -0.89 -25.00 11.38 55.43 0.63 -24.37 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.53 -11.64 5.17 -224.68 -1.16 -12.80 16 15 C 0.06 1.29 4.60 -2.30 -0.01 1.28 16 16 C -0.17 -2.86 6.75 -24.59 -0.17 -3.02 16 17 C 0.07 1.27 4.03 -65.89 -0.27 1.00 16 18 H 0.08 1.61 8.13 -51.93 -0.42 1.19 16 19 N -0.84 -12.07 9.34 -3.12 -0.03 -12.10 16 20 C 0.06 1.20 6.05 -2.84 -0.02 1.18 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 2.05 6.22 -51.93 -0.32 1.73 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.08 1.77 5.25 -51.93 -0.27 1.50 16 28 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 29 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.33 4.08 9.08 -39.29 -0.36 3.72 16 32 H 0.34 4.41 8.86 -39.29 -0.35 4.06 16 33 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.07 1.47 7.06 -51.93 -0.37 1.10 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -27.89 267.18 -6.74 -34.63 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.33 Total: 6.02 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.40 Total: -3.06 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.56 Total: -49.27 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.25 Total: -8.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.89 -6.74 -34.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.712 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds