Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00043 * 2 1 4 4 C 1.53000 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46949 * 184.99328 * 4 3 2 6 6 C 1.50694 * 109.47174 * 304.99858 * 4 3 2 7 7 H 1.08000 * 120.00563 * 119.99919 * 6 4 3 8 8 C 1.37885 * 119.99902 * 300.00082 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 N 1.46903 * 109.47120 * 64.99820 * 4 3 2 15 15 C 1.47846 * 110.99976 * 295.84635 * 14 4 3 16 16 C 1.54908 * 104.79420 * 213.63663 * 15 14 4 17 17 C 1.55146 * 101.65325 * 37.06697 * 16 15 14 18 18 H 1.09000 * 110.70648 * 82.72658 * 17 16 15 19 19 N 1.46893 * 110.85460 * 205.89286 * 17 16 15 20 20 C 1.47442 * 110.99796 * 175.00017 * 14 4 3 21 21 H 1.09005 * 109.47178 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47068 * 299.99976 * 1 2 3 23 23 H 1.08993 * 109.47475 * 60.00201 * 1 2 3 24 24 H 1.09001 * 109.47043 * 59.99550 * 3 2 1 25 25 H 1.09002 * 109.46855 * 299.99843 * 3 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 27 27 H 1.09004 * 110.37289 * 332.46170 * 15 14 4 28 28 H 1.08996 * 110.37949 * 94.80489 * 15 14 4 29 29 H 1.08994 * 110.99328 * 278.97765 * 16 15 14 30 30 H 1.09001 * 110.99002 * 155.15855 * 16 15 14 31 31 H 1.00896 * 111.00209 * 293.68565 * 19 17 16 32 32 H 1.00901 * 110.99927 * 57.64329 * 19 17 16 33 33 H 1.09001 * 109.88412 * 242.65793 * 20 14 4 34 34 H 1.08995 * 109.89228 * 3.85033 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0888 6 6 3.9723 0.3325 1.1629 7 1 4.5229 -0.5800 0.9873 8 6 3.6692 0.7176 2.4517 9 7 2.9992 1.8289 2.6655 10 14 4.2102 -0.3392 3.8939 11 1 3.1501 -1.3312 4.2058 12 1 5.4658 -1.0503 3.5430 13 1 4.4448 0.5239 5.0793 14 7 3.9769 0.5627 -1.2562 15 6 3.4751 -0.8237 -1.3657 16 6 4.5890 -1.5888 -2.1230 17 6 5.8697 -0.9335 -1.5423 18 1 6.1374 -1.3890 -0.5890 19 7 6.9846 -1.0312 -2.4938 20 6 5.4484 0.5379 -1.3447 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 2.7857 2.0996 3.5722 27 1 3.3263 -1.2528 -0.3748 28 1 2.5451 -0.8470 -1.9338 29 1 4.5171 -1.4205 -3.1975 30 1 4.5567 -2.6538 -1.8931 31 1 7.2637 -1.9917 -2.6263 32 1 6.7476 -0.5987 -3.3741 33 1 5.7789 1.1355 -2.1942 34 1 5.8820 0.9272 -0.4236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -58.218991 kcal Electronic energy + Delta-G solvation = -15565.753866 eV Core-core repulsion = 13111.771803 eV Total energy + Delta-G solvation = -2453.982064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25229 -38.16824 -35.61480 -34.04818 -31.38542 -29.59407 -27.48813 -27.37423 -26.22233 -22.97312 -21.62421 -21.04432 -18.50297 -17.55931 -17.13629 -16.73780 -16.16716 -15.81450 -15.55920 -15.18192 -14.53367 -14.33447 -13.90533 -13.61539 -13.23774 -12.94454 -12.79511 -12.68015 -12.35513 -12.27594 -12.03703 -11.86405 -11.74488 -11.46623 -11.03837 -10.56109 -10.12543 -9.52133 -8.93231 -8.03051 -6.18585 1.37951 1.39695 1.47667 2.42528 3.19365 3.35051 3.46488 3.69862 3.96406 4.04912 4.30448 4.56105 4.62839 4.65522 4.75371 4.78014 4.85755 4.94219 5.04108 5.10503 5.17558 5.29351 5.36202 5.46199 5.57481 5.83531 6.11902 6.25100 6.39059 6.54215 6.69663 6.75185 6.93410 7.48532 8.95036 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.013519 C = 0.010177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.778452 B = 2070.719176 C = 2750.703734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.387 6.387 3 C 0.090 3.910 4 C 0.207 3.793 5 H 0.020 0.980 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.272 1.272 13 H -0.285 1.285 14 N -0.533 5.533 15 C 0.065 3.935 16 C -0.154 4.154 17 C 0.084 3.916 18 H 0.065 0.935 19 N -0.837 5.837 20 C 0.059 3.941 21 H 0.092 0.908 22 H 0.023 0.977 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.350 0.650 32 H 0.348 0.652 33 H 0.072 0.928 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -5.676 -8.064 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.306 6.306 3 C 0.013 3.987 4 C 0.099 3.901 5 H 0.038 0.962 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.177 4.177 9 N -0.558 5.558 10 Si 0.771 3.229 11 H -0.207 1.207 12 H -0.197 1.197 13 H -0.210 1.210 14 N -0.257 5.257 15 C -0.063 4.063 16 C -0.194 4.194 17 C -0.029 4.029 18 H 0.083 0.917 19 N -0.367 5.367 20 C -0.070 4.070 21 H 0.111 0.889 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.619 -4.977 -7.794 9.268 hybrid contribution -0.553 -0.911 1.325 1.701 sum 0.066 -5.888 -6.469 8.748 Atomic orbital electron populations 1.22729 0.82409 1.02521 0.99140 1.87951 1.18784 1.28725 1.95128 1.22359 0.95401 0.83621 0.97354 1.19346 0.90636 0.94056 0.86015 0.96224 1.21656 1.34556 1.07740 0.91911 0.93145 1.25520 0.95199 0.95990 1.00978 1.69955 1.40923 1.23740 1.21224 0.85767 0.78522 0.78974 0.79621 1.20652 1.19721 1.21022 1.63901 1.08200 1.18416 1.35217 1.22727 0.96677 0.87810 0.99094 1.23495 0.95947 0.99690 1.00277 1.22441 0.89285 0.95464 0.95733 0.91687 1.58725 1.38669 1.23486 1.15841 1.22563 0.88394 0.96040 1.00008 0.88908 0.95835 0.93943 0.93030 0.96519 0.93083 0.93677 0.92081 0.90178 0.90572 0.83622 0.83810 0.90990 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.27 16 2 O -0.39 -17.70 7.18 -148.98 -1.07 -18.77 16 3 C 0.09 4.39 5.39 71.98 0.39 4.78 16 4 C 0.21 10.55 2.15 44.17 0.10 10.65 16 5 H 0.02 1.12 8.13 -2.39 -0.02 1.10 16 6 C -0.52 -28.14 5.97 25.60 0.15 -27.98 16 7 H 0.05 2.76 6.57 -2.91 -0.02 2.74 16 8 C 0.02 1.22 5.30 84.66 0.45 1.67 16 9 N -0.92 -52.40 11.38 21.45 0.24 -52.15 16 10 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 14 N -0.53 -23.22 5.17 -864.75 -4.47 -27.69 16 15 C 0.07 2.60 4.60 86.77 0.40 3.00 16 16 C -0.15 -4.76 6.75 31.98 0.22 -4.54 16 17 C 0.08 2.78 4.03 46.10 0.19 2.96 16 18 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 19 N -0.84 -21.60 9.34 -163.80 -1.53 -23.13 16 20 C 0.06 2.33 6.05 86.65 0.52 2.85 16 21 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 22 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 2.79 6.22 -2.39 -0.01 2.78 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.04 2.10 5.25 -2.38 -0.01 2.08 16 28 H 0.06 2.41 7.64 -2.39 -0.02 2.39 16 29 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.35 7.36 9.08 -89.70 -0.81 6.54 16 32 H 0.35 7.90 8.86 -89.69 -0.79 7.11 16 33 H 0.07 2.62 7.92 -2.39 -0.02 2.60 16 34 H 0.03 1.56 7.06 -2.39 -0.02 1.55 16 Total: -1.00 -59.95 267.18 -1.65 -61.60 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.51 Total: 18.13 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 3.66 Total: -4.34 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -5.75 Total: -102.97 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.07 Total: -18.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -59.95 -1.65 -61.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.380 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds