Wall clock time and date at job start Mon Mar 30 2020 03:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46892 * 111.00117 * 2 1 4 4 C 1.46899 * 110.99722 * 123.95148 * 2 1 3 5 5 C 1.53008 * 109.47137 * 170.00233 * 4 2 1 6 6 N 1.46499 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.36941 * 119.99993 * 95.64599 * 6 5 4 8 8 H 1.07995 * 120.00223 * 217.24127 * 7 6 5 9 9 C 1.38814 * 119.99890 * 37.23738 * 7 6 5 10 10 N 1.31618 * 119.99866 * 213.54754 * 9 7 6 11 11 Si 1.86802 * 119.99892 * 33.54782 * 9 7 6 12 12 H 1.48498 * 109.47200 * 91.93569 * 11 9 7 13 13 H 1.48495 * 109.46986 * 211.93998 * 11 9 7 14 14 H 1.48507 * 109.47009 * 331.93756 * 11 9 7 15 15 C 1.46503 * 120.00354 * 275.64980 * 6 5 4 16 16 C 1.54032 * 113.81609 * 215.34723 * 15 6 5 17 17 O 1.44455 * 85.42300 * 223.23245 * 16 15 6 18 18 C 1.44178 * 93.38020 * 24.08934 * 17 16 15 19 19 H 1.09004 * 109.47251 * 296.04814 * 1 2 3 20 20 H 1.09002 * 109.47360 * 56.04808 * 1 2 3 21 21 H 1.08998 * 109.47216 * 176.04544 * 1 2 3 22 22 H 1.09004 * 109.47378 * 183.95182 * 3 2 1 23 23 H 1.09000 * 109.47066 * 303.95300 * 3 2 1 24 24 H 1.09007 * 109.47864 * 63.95124 * 3 2 1 25 25 H 1.09000 * 109.47689 * 49.99865 * 4 2 1 26 26 H 1.09006 * 109.47371 * 290.00240 * 4 2 1 27 27 H 1.08995 * 109.46920 * 60.00006 * 5 4 2 28 28 H 1.08995 * 109.46907 * 299.99747 * 5 4 2 29 29 H 0.97004 * 119.99253 * 180.02562 * 10 9 7 30 30 H 1.09005 * 112.99310 * 347.17368 * 15 6 5 31 31 H 1.09000 * 113.86474 * 337.33423 * 16 15 6 32 32 H 1.08994 * 113.86576 * 109.04412 * 16 15 6 33 33 H 1.09002 * 113.86488 * 221.77159 * 18 17 16 34 34 H 1.08997 * 113.98444 * 90.07084 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9705 6 7 4.0295 -1.7186 2.1053 7 6 4.1909 -3.0746 2.0025 8 1 3.9851 -3.7089 2.8520 9 6 4.6189 -3.6339 0.8062 10 7 4.1833 -4.8212 0.4419 11 14 5.8130 -2.7012 -0.2863 12 1 7.2047 -3.0884 0.0579 13 1 5.5445 -3.0324 -1.7087 14 1 5.6391 -1.2414 -0.0766 15 6 4.3818 -1.0314 3.3503 16 6 5.6063 -1.6312 4.0667 17 8 4.8304 -1.4758 5.2752 18 6 3.5718 -1.5039 4.5724 19 1 -0.3634 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 3.0828 1.3432 -0.0708 23 1 1.5898 1.9162 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 1.5089 -1.7406 1.1758 26 1 1.7974 -0.2247 2.0629 27 1 3.9909 0.0193 0.9325 28 1 3.7024 -1.4966 0.0454 29 1 4.4828 -5.2121 -0.3939 30 1 4.4225 0.0524 3.2415 31 1 5.8073 -2.6694 3.8022 32 1 6.4938 -0.9997 4.0267 33 1 2.8492 -0.7716 4.9324 34 1 3.1484 -2.5022 4.4616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:05 Heat of formation + Delta-G solvation = 23.750692 kcal Electronic energy + Delta-G solvation = -15243.429309 eV Core-core repulsion = 12793.001717 eV Total energy + Delta-G solvation = -2450.427591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49276 -37.29679 -34.85944 -31.68715 -29.21571 -27.36425 -27.05942 -25.69704 -24.36777 -22.43701 -20.53735 -19.43223 -16.55613 -15.94925 -15.54765 -15.31931 -14.86377 -14.72253 -14.32389 -14.14285 -13.02502 -12.78423 -12.46074 -12.19712 -11.95180 -11.73216 -11.57170 -11.43340 -11.28063 -10.81146 -10.59648 -10.36582 -10.10468 -9.85975 -9.53020 -8.83945 -8.49629 -8.00011 -6.90793 -6.15170 -3.46919 3.35662 3.47733 3.51393 4.24560 4.49709 4.53516 4.97724 5.17817 5.41201 5.43043 5.50928 5.62598 5.68557 5.74564 5.88228 5.94205 6.05047 6.08022 6.13035 6.20739 6.30302 6.31065 6.67990 6.76883 6.86136 6.90476 6.92428 7.40345 7.44185 7.94438 8.29638 8.90744 9.63449 10.04389 10.99436 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.014130 C = 0.009873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.999892 B = 1981.085643 C = 2835.396674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.039 3.961 5 C 0.152 3.848 6 N -0.585 5.585 7 C -0.290 4.290 8 H 0.078 0.922 9 C 0.055 3.945 10 N -0.873 5.873 11 Si 0.851 3.149 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.262 1.262 15 C 0.113 3.887 16 C 0.023 3.977 17 O -0.400 6.400 18 C 0.013 3.987 19 H 0.019 0.981 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.020 0.980 25 H 0.080 0.920 26 H 0.022 0.978 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 9.990 0.735 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.090 4.090 5 C 0.026 3.974 6 N -0.306 5.306 7 C -0.417 4.417 8 H 0.095 0.905 9 C -0.148 4.148 10 N -0.510 5.510 11 Si 0.678 3.322 12 H -0.217 1.217 13 H -0.219 1.219 14 H -0.186 1.186 15 C 0.004 3.996 16 C -0.055 4.055 17 O -0.318 6.318 18 C -0.067 4.067 19 H 0.037 0.963 20 H 0.079 0.921 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.160 9.610 0.435 10.126 hybrid contribution 0.338 0.775 -0.106 0.852 sum -2.822 10.385 0.330 10.767 Atomic orbital electron populations 1.22335 0.88100 1.02087 0.99528 1.61972 1.07254 1.13257 1.44830 1.22400 1.01160 0.89324 0.99570 1.22892 0.99353 0.97604 0.89170 1.21195 0.89992 0.94416 0.91758 1.44230 1.70998 1.05040 1.10350 1.18480 1.43147 0.80250 0.99834 0.90487 1.25421 0.97375 0.94922 0.97103 1.70053 1.40091 1.18551 1.22353 0.87317 0.83388 0.81752 0.79761 1.21690 1.21889 1.18623 1.23686 0.92723 0.95975 0.87181 1.24608 0.95848 1.02552 0.82483 1.89534 1.18537 1.94555 1.29173 1.24665 0.88292 1.01434 0.92296 0.96275 0.92070 0.91377 0.91224 0.92109 0.96187 0.90149 0.95981 0.94843 0.91558 0.92492 0.90234 0.88469 0.91011 0.91291 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.57 60.06 0.57 0.97 16 2 N -0.55 -9.20 5.02 -251.26 -1.26 -10.46 16 3 C 0.02 0.34 9.32 60.06 0.56 0.90 16 4 C 0.04 0.74 5.28 -3.82 -0.02 0.72 16 5 C 0.15 3.22 3.82 -4.04 -0.02 3.20 16 6 N -0.59 -13.19 2.30 -173.17 -0.40 -13.59 16 7 C -0.29 -7.59 7.90 -15.06 -0.12 -7.71 16 8 H 0.08 2.19 7.34 -52.49 -0.39 1.81 16 9 C 0.06 1.52 5.00 -17.43 -0.09 1.43 16 10 N -0.87 -25.47 13.97 55.49 0.78 -24.70 16 11 Si 0.85 20.93 26.38 -169.99 -4.48 16.45 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.26 -6.14 5.81 56.52 0.33 -5.82 16 15 C 0.11 2.23 4.65 -66.85 -0.31 1.92 16 16 C 0.02 0.46 8.68 37.64 0.33 0.78 16 17 O -0.40 -8.05 12.46 -35.23 -0.44 -8.49 16 18 C 0.01 0.24 8.82 37.64 0.33 0.57 16 19 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 20 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 21 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 22 H 0.07 1.01 6.47 -51.93 -0.34 0.68 16 23 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 1.69 8.06 -51.93 -0.42 1.27 16 26 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.03 0.66 6.46 -51.93 -0.34 0.32 16 28 H 0.07 1.57 4.62 -51.93 -0.24 1.33 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 31 H 0.10 2.10 6.91 -51.93 -0.36 1.74 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.70 7.25 -51.93 -0.38 1.33 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -28.69 271.72 -5.93 -34.61 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.45 Total: -0.72 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 1.24 Total: 2.79 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.88 Total: -48.74 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.44 Total: -8.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.48 Total: 16.45 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.69 -5.93 -34.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds