Wall clock time and date at job start Mon Mar 30 2020 03:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46892 * 111.00117 * 2 1 4 4 C 1.46899 * 110.99722 * 123.95148 * 2 1 3 5 5 C 1.53008 * 109.47137 * 170.00233 * 4 2 1 6 6 N 1.46499 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.36941 * 119.99993 * 95.64599 * 6 5 4 8 8 H 1.07995 * 120.00223 * 217.24127 * 7 6 5 9 9 C 1.38814 * 119.99890 * 37.23738 * 7 6 5 10 10 N 1.31618 * 119.99866 * 213.54754 * 9 7 6 11 11 Si 1.86802 * 119.99892 * 33.54782 * 9 7 6 12 12 H 1.48498 * 109.47200 * 91.93569 * 11 9 7 13 13 H 1.48495 * 109.46986 * 211.93998 * 11 9 7 14 14 H 1.48507 * 109.47009 * 331.93756 * 11 9 7 15 15 C 1.46503 * 120.00354 * 275.64980 * 6 5 4 16 16 C 1.54032 * 113.81609 * 215.34723 * 15 6 5 17 17 O 1.44455 * 85.42300 * 223.23245 * 16 15 6 18 18 C 1.44178 * 93.38020 * 24.08934 * 17 16 15 19 19 H 1.09004 * 109.47251 * 296.04814 * 1 2 3 20 20 H 1.09002 * 109.47360 * 56.04808 * 1 2 3 21 21 H 1.08998 * 109.47216 * 176.04544 * 1 2 3 22 22 H 1.09004 * 109.47378 * 183.95182 * 3 2 1 23 23 H 1.09000 * 109.47066 * 303.95300 * 3 2 1 24 24 H 1.09007 * 109.47864 * 63.95124 * 3 2 1 25 25 H 1.09000 * 109.47689 * 49.99865 * 4 2 1 26 26 H 1.09006 * 109.47371 * 290.00240 * 4 2 1 27 27 H 1.08995 * 109.46920 * 60.00006 * 5 4 2 28 28 H 1.08995 * 109.46907 * 299.99747 * 5 4 2 29 29 H 0.97004 * 119.99253 * 180.02562 * 10 9 7 30 30 H 1.09005 * 112.99310 * 347.17368 * 15 6 5 31 31 H 1.09000 * 113.86474 * 337.33423 * 16 15 6 32 32 H 1.08994 * 113.86576 * 109.04412 * 16 15 6 33 33 H 1.09002 * 113.86488 * 221.77159 * 18 17 16 34 34 H 1.08997 * 113.98444 * 90.07084 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9705 6 7 4.0295 -1.7186 2.1053 7 6 4.1909 -3.0746 2.0025 8 1 3.9851 -3.7089 2.8520 9 6 4.6189 -3.6339 0.8062 10 7 4.1833 -4.8212 0.4419 11 14 5.8130 -2.7012 -0.2863 12 1 7.2047 -3.0884 0.0579 13 1 5.5445 -3.0324 -1.7087 14 1 5.6391 -1.2414 -0.0766 15 6 4.3818 -1.0314 3.3503 16 6 5.6063 -1.6312 4.0667 17 8 4.8304 -1.4758 5.2752 18 6 3.5718 -1.5039 4.5724 19 1 -0.3634 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 3.0828 1.3432 -0.0708 23 1 1.5898 1.9162 -0.8524 24 1 1.7044 1.8724 0.9233 25 1 1.5089 -1.7406 1.1758 26 1 1.7974 -0.2247 2.0629 27 1 3.9909 0.0193 0.9325 28 1 3.7024 -1.4966 0.0454 29 1 4.4828 -5.2121 -0.3939 30 1 4.4225 0.0524 3.2415 31 1 5.8073 -2.6694 3.8022 32 1 6.4938 -0.9997 4.0267 33 1 2.8492 -0.7716 4.9324 34 1 3.1484 -2.5022 4.4616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:05 Heat of formation + Delta-G solvation = 2.405006 kcal Electronic energy + Delta-G solvation = -15244.354927 eV Core-core repulsion = 12793.001717 eV Total energy + Delta-G solvation = -2451.353210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09327 -38.67005 -36.56280 -33.70214 -30.75036 -28.84642 -28.40291 -27.24985 -26.06408 -24.03688 -21.97383 -21.15744 -18.39968 -17.63876 -17.23497 -16.86633 -16.32369 -16.16205 -15.85755 -15.59030 -14.64978 -14.58909 -14.13089 -13.66500 -13.39562 -13.28009 -13.07159 -12.73434 -12.57668 -12.54632 -12.34729 -12.10047 -11.76083 -11.57160 -11.32207 -10.56090 -10.44111 -9.25284 -8.77061 -8.26170 -5.54023 1.38902 1.47165 1.54519 2.46303 2.77735 2.99067 3.12681 3.55027 3.80514 4.14829 4.21916 4.32162 4.37042 4.43289 4.54975 4.66121 4.69873 4.70923 4.72579 4.80082 5.00760 5.04643 5.11451 5.17361 5.26214 5.30816 5.32694 5.90846 6.12373 6.19770 6.22307 6.97653 7.63124 8.05083 8.92949 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.014130 C = 0.009873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.999892 B = 1981.085643 C = 2835.396674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.569 5.569 3 C 0.024 3.976 4 C 0.055 3.945 5 C 0.151 3.849 6 N -0.594 5.594 7 C -0.267 4.267 8 H 0.041 0.959 9 C 0.004 3.996 10 N -0.924 5.924 11 Si 0.911 3.089 12 H -0.294 1.294 13 H -0.301 1.301 14 H -0.239 1.239 15 C 0.112 3.888 16 C 0.022 3.978 17 O -0.406 6.406 18 C 0.017 3.983 19 H 0.029 0.971 20 H 0.083 0.917 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 13.038 0.739 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.294 5.294 3 C -0.124 4.124 4 C -0.075 4.075 5 C 0.026 3.974 6 N -0.316 5.316 7 C -0.396 4.396 8 H 0.059 0.941 9 C -0.196 4.196 10 N -0.565 5.565 11 Si 0.738 3.262 12 H -0.222 1.222 13 H -0.228 1.228 14 H -0.162 1.162 15 C 0.004 3.996 16 C -0.056 4.056 17 O -0.325 6.325 18 C -0.062 4.062 19 H 0.048 0.952 20 H 0.102 0.898 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.141 12.709 0.455 13.099 hybrid contribution 0.251 -0.150 -0.026 0.294 sum -2.890 12.560 0.429 12.895 Atomic orbital electron populations 1.22368 0.86432 1.02049 1.01073 1.61918 1.08954 1.14864 1.43714 1.22456 1.00866 0.87912 1.01159 1.22522 0.97517 0.96733 0.90713 1.21206 0.91685 0.94606 0.89911 1.44275 1.71641 1.03911 1.11749 1.18265 1.41156 0.81906 0.98310 0.94100 1.25929 0.98956 0.95774 0.98894 1.70149 1.42192 1.20778 1.23337 0.86358 0.80669 0.81753 0.77448 1.22153 1.22824 1.16238 1.23914 0.92673 0.97421 0.85608 1.24579 0.97067 1.01564 0.82344 1.89534 1.19007 1.94415 1.29557 1.24613 0.88551 1.00959 0.92101 0.95214 0.89798 0.92454 0.91735 0.89988 0.95002 0.93404 0.94827 0.92422 0.94287 0.92725 0.86941 0.91315 0.88019 0.88071 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.57 127.69 1.22 1.95 16 2 N -0.57 -17.71 5.02 -948.83 -4.76 -22.47 16 3 C 0.02 0.58 9.32 127.69 1.19 1.78 16 4 C 0.06 1.99 5.28 86.31 0.46 2.45 16 5 C 0.15 6.09 3.82 86.38 0.33 6.42 16 6 N -0.59 -26.07 2.30 -712.84 -1.64 -27.71 16 7 C -0.27 -14.27 7.90 84.03 0.66 -13.61 16 8 H 0.04 2.45 7.34 -2.91 -0.02 2.43 16 9 C 0.00 0.22 5.00 84.86 0.42 0.64 16 10 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 11 Si 0.91 43.60 26.38 68.60 1.81 45.41 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 H -0.24 -10.42 5.81 99.48 0.58 -9.84 16 15 C 0.11 4.12 4.65 45.69 0.21 4.33 16 16 C 0.02 0.84 8.68 72.30 0.63 1.47 16 17 O -0.41 -15.60 12.46 -148.98 -1.86 -17.46 16 18 C 0.02 0.61 8.82 72.30 0.64 1.25 16 19 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 20 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 21 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 22 H 0.06 1.63 6.47 -2.39 -0.02 1.62 16 23 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 24 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.05 2.02 8.06 -2.39 -0.02 2.00 16 26 H 0.03 1.13 8.12 -2.38 -0.02 1.11 16 27 H 0.06 2.05 6.46 -2.39 -0.02 2.03 16 28 H 0.04 1.79 4.62 -2.39 -0.01 1.78 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.11 3.47 8.04 -2.38 -0.02 3.45 16 31 H 0.07 2.98 6.91 -2.39 -0.02 2.96 16 32 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.06 2.37 7.25 -2.39 -0.02 2.35 16 Total: -1.00 -62.36 271.72 0.55 -61.81 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.93 Total: 9.29 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.76 Total: 6.68 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -6.10 Total: -105.74 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.86 Total: -17.46 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.81 Total: 45.41 kcal Total: -62.36 0.55 -61.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.213 kcal (2) G-P(sol) polarization free energy of solvation -62.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds