Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46956 * 111.00113 * 2 1 4 4 C 1.53054 * 109.36546 * 183.19121 * 3 2 1 5 5 N 1.46954 * 109.36163 * 301.59706 * 4 3 2 6 6 C 1.46905 * 110.99917 * 183.18957 * 5 4 3 7 7 C 1.46953 * 110.88173 * 59.32498 * 5 4 3 8 8 H 1.08993 * 109.49033 * 60.64447 * 7 5 4 9 9 C 1.53005 * 109.49180 * 180.71029 * 7 5 4 10 10 O 1.42896 * 109.47062 * 293.04509 * 9 7 5 11 11 C 1.34927 * 116.99941 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31585 * 119.99753 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46937 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47188 * 119.99683 * 15 13 11 18 18 H 1.48502 * 109.46897 * 239.99740 * 15 13 11 19 19 C 1.46957 * 111.00302 * 123.79970 * 2 1 3 20 20 H 1.08997 * 109.47113 * 56.04380 * 1 2 3 21 21 H 1.09000 * 109.47108 * 176.04453 * 1 2 3 22 22 H 1.09004 * 109.47085 * 296.04341 * 1 2 3 23 23 H 1.09002 * 109.48975 * 63.22218 * 3 2 1 24 24 H 1.08999 * 109.50791 * 303.16453 * 3 2 1 25 25 H 1.09006 * 109.48538 * 181.63498 * 4 3 2 26 26 H 1.08998 * 109.48968 * 61.56173 * 4 3 2 27 27 H 1.08996 * 109.47180 * 49.25938 * 6 5 4 28 28 H 1.09000 * 109.47169 * 169.25830 * 6 5 4 29 29 H 1.08996 * 109.47184 * 289.25238 * 6 5 4 30 30 H 1.09001 * 109.46689 * 53.04325 * 9 7 5 31 31 H 1.08995 * 109.47315 * 173.03761 * 9 7 5 32 32 H 0.96996 * 119.99331 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.49055 * 296.77933 * 19 2 1 34 34 H 1.09003 * 109.48713 * 56.84054 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5659 1.0597 7 6 3.5235 -0.8061 1.0597 8 1 3.8254 -1.3115 0.1424 9 6 4.0770 -1.5654 2.2672 10 8 5.4863 -1.7440 2.1124 11 6 6.1324 -2.4007 3.0982 12 1 5.5841 -2.7639 3.9548 13 6 7.5005 -2.6083 3.0120 14 7 8.1687 -2.1653 1.9685 15 14 8.3952 -3.5169 4.3770 16 1 7.4242 -3.9081 5.4303 17 1 9.0407 -4.7334 3.8216 18 1 9.4319 -2.6307 4.9646 19 6 1.9957 -0.7632 1.1401 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3633 -1.0252 -0.0709 22 1 -0.3633 0.4512 0.9234 23 1 1.6938 1.8774 0.9174 24 1 1.6014 1.9132 -0.8601 25 1 3.9177 2.3449 -0.0512 26 1 3.8253 0.8479 -1.0106 27 1 5.8824 1.5859 0.9355 28 1 5.8825 0.1634 2.0052 29 1 5.8824 -0.0518 0.2384 30 1 3.8806 -0.9959 3.1756 31 1 3.5928 -2.5394 2.3371 32 1 9.1257 -2.3109 1.9081 33 1 1.6938 -0.2821 2.0704 34 1 1.6013 -1.7790 1.1110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -15.520421 kcal Electronic energy + Delta-G solvation = -15145.385411 eV Core-core repulsion = 12693.254896 eV Total energy + Delta-G solvation = -2452.130515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.13802 -36.35164 -34.69574 -31.99782 -30.92234 -28.87734 -25.97902 -24.79967 -23.83312 -22.78340 -21.16401 -19.29284 -17.43301 -15.69121 -15.40888 -15.31345 -14.77591 -14.46566 -14.16934 -13.69528 -13.42002 -12.84916 -12.52390 -12.18966 -11.95577 -11.80565 -11.34590 -11.18035 -10.99571 -10.87154 -10.76394 -10.40577 -10.37534 -9.93982 -9.39306 -9.02505 -8.26613 -7.91013 -7.67328 -5.93416 -3.55824 3.32201 3.36024 3.40014 4.00109 4.34575 4.48885 5.08122 5.12755 5.31726 5.40114 5.44072 5.56544 5.61223 5.71394 5.75129 5.82522 5.94400 6.03765 6.17930 6.25521 6.35167 6.51444 6.58113 6.68987 6.86252 7.11841 7.12006 7.39783 7.52359 7.72870 7.81401 8.45934 9.50803 10.17935 11.27301 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059542 B = 0.007254 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.142971 B = 3858.787439 C = 4194.840873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.059 3.941 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.033 3.967 7 C 0.093 3.907 8 H 0.052 0.948 9 C 0.079 3.921 10 O -0.287 6.287 11 C -0.360 4.360 12 H 0.061 0.939 13 C 0.024 3.976 14 N -0.888 5.888 15 Si 0.922 3.078 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.066 3.934 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.023 0.977 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.041 0.959 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 5.400 -2.778 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.076 4.076 5 N -0.263 5.263 6 C -0.114 4.114 7 C -0.016 4.016 8 H 0.070 0.930 9 C 0.000 4.000 10 O -0.203 6.203 11 C -0.439 4.439 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.531 5.531 15 Si 0.750 3.250 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.062 4.062 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.645 5.472 -2.999 13.211 hybrid contribution 0.306 -0.554 0.814 1.031 sum -11.338 4.918 -2.185 12.551 Atomic orbital electron populations 1.22323 0.87585 1.02044 1.00178 1.62104 1.07378 1.14127 1.43471 1.22170 0.95345 0.89063 1.00384 1.22158 0.93613 0.98596 0.93197 1.62278 1.10125 1.13142 1.40779 1.22542 0.84410 0.98772 1.05631 1.21612 0.92126 0.89036 0.98868 0.93015 1.22048 0.86856 0.96033 0.95039 1.85729 1.14151 1.75274 1.45113 1.20848 0.90936 1.32951 0.99171 0.92094 1.24902 0.95671 0.99073 0.97760 1.70021 1.07472 1.47175 1.28423 0.85931 0.79595 0.78993 0.80464 1.20027 1.21012 1.20961 1.22105 0.94641 0.98053 0.91403 0.91631 0.91465 0.95801 0.94245 0.90855 0.90761 0.94473 0.94135 0.87188 0.95052 0.95036 0.95464 0.93367 0.94056 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.60 60.06 0.58 0.88 16 2 N -0.55 -7.94 4.97 -242.75 -1.21 -9.14 16 3 C 0.06 0.81 5.62 -3.77 -0.02 0.79 16 4 C 0.05 0.85 5.61 -3.77 -0.02 0.83 16 5 N -0.54 -10.41 4.78 -234.73 -1.12 -11.53 16 6 C 0.03 0.73 8.33 60.07 0.50 1.23 16 7 C 0.09 1.82 2.38 -67.65 -0.16 1.66 16 8 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 9 C 0.08 1.77 5.32 37.16 0.20 1.96 16 10 O -0.29 -7.99 6.38 -16.50 -0.11 -8.09 16 11 C -0.36 -10.44 9.89 30.88 0.31 -10.13 16 12 H 0.06 1.69 7.77 -52.49 -0.41 1.28 16 13 C 0.02 0.70 5.49 -17.51 -0.10 0.60 16 14 N -0.89 -27.25 13.68 55.48 0.76 -26.49 16 15 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.07 1.06 4.90 -3.77 -0.02 1.04 16 20 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 28 H 0.11 2.83 5.80 -51.93 -0.30 2.53 16 29 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -31.36 273.40 -7.06 -38.42 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.75 Total: -3.16 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 1.26 Total: -1.14 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -1.57 Total: -47.16 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.11 Total: -8.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.36 -7.06 -38.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.899 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds