Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46956 * 111.00113 * 2 1 4 4 C 1.53054 * 109.36546 * 183.19121 * 3 2 1 5 5 N 1.46954 * 109.36163 * 301.59706 * 4 3 2 6 6 C 1.46905 * 110.99917 * 183.18957 * 5 4 3 7 7 C 1.46953 * 110.88173 * 59.32498 * 5 4 3 8 8 H 1.08993 * 109.49033 * 60.64447 * 7 5 4 9 9 C 1.53005 * 109.49180 * 180.71029 * 7 5 4 10 10 O 1.42896 * 109.47062 * 293.04509 * 9 7 5 11 11 C 1.34927 * 116.99941 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99820 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31585 * 119.99753 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46937 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47188 * 119.99683 * 15 13 11 18 18 H 1.48502 * 109.46897 * 239.99740 * 15 13 11 19 19 C 1.46957 * 111.00302 * 123.79970 * 2 1 3 20 20 H 1.08997 * 109.47113 * 56.04380 * 1 2 3 21 21 H 1.09000 * 109.47108 * 176.04453 * 1 2 3 22 22 H 1.09004 * 109.47085 * 296.04341 * 1 2 3 23 23 H 1.09002 * 109.48975 * 63.22218 * 3 2 1 24 24 H 1.08999 * 109.50791 * 303.16453 * 3 2 1 25 25 H 1.09006 * 109.48538 * 181.63498 * 4 3 2 26 26 H 1.08998 * 109.48968 * 61.56173 * 4 3 2 27 27 H 1.08996 * 109.47180 * 49.25938 * 6 5 4 28 28 H 1.09000 * 109.47169 * 169.25830 * 6 5 4 29 29 H 1.08996 * 109.47184 * 289.25238 * 6 5 4 30 30 H 1.09001 * 109.46689 * 53.04325 * 9 7 5 31 31 H 1.08995 * 109.47315 * 173.03761 * 9 7 5 32 32 H 0.96996 * 119.99331 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.49055 * 296.77933 * 19 2 1 34 34 H 1.09003 * 109.48713 * 56.84054 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5659 1.0597 7 6 3.5235 -0.8061 1.0597 8 1 3.8254 -1.3115 0.1424 9 6 4.0770 -1.5654 2.2672 10 8 5.4863 -1.7440 2.1124 11 6 6.1324 -2.4007 3.0982 12 1 5.5841 -2.7639 3.9548 13 6 7.5005 -2.6083 3.0120 14 7 8.1687 -2.1653 1.9685 15 14 8.3952 -3.5169 4.3770 16 1 7.4242 -3.9081 5.4303 17 1 9.0407 -4.7334 3.8216 18 1 9.4319 -2.6307 4.9646 19 6 1.9957 -0.7632 1.1401 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3633 -1.0252 -0.0709 22 1 -0.3633 0.4512 0.9234 23 1 1.6938 1.8774 0.9174 24 1 1.6014 1.9132 -0.8601 25 1 3.9177 2.3449 -0.0512 26 1 3.8253 0.8479 -1.0106 27 1 5.8824 1.5859 0.9355 28 1 5.8825 0.1634 2.0052 29 1 5.8824 -0.0518 0.2384 30 1 3.8806 -0.9959 3.1756 31 1 3.5928 -2.5394 2.3371 32 1 9.1257 -2.3109 1.9081 33 1 1.6938 -0.2821 2.0704 34 1 1.6013 -1.7790 1.1110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -39.901628 kcal Electronic energy + Delta-G solvation = -15146.442659 eV Core-core repulsion = 12693.254896 eV Total energy + Delta-G solvation = -2453.187763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55055 -38.18588 -36.17604 -33.99568 -32.59552 -30.18663 -27.67673 -26.29176 -25.72910 -24.17144 -22.59751 -20.76527 -19.54001 -17.44221 -17.11539 -16.75416 -16.13835 -15.78044 -15.70371 -15.39309 -14.86649 -14.60182 -14.31630 -13.58298 -13.38691 -13.14559 -13.01931 -12.82390 -12.69623 -12.35170 -12.24181 -12.11507 -11.83041 -11.61620 -11.39559 -11.03341 -10.07034 -9.40904 -9.24974 -8.14287 -5.82333 1.41084 1.45744 1.56359 2.33639 2.90023 2.96400 3.19512 3.65465 3.89383 4.06771 4.20212 4.33883 4.37213 4.46986 4.55078 4.63586 4.68978 4.71484 4.75349 4.76718 4.80002 4.94689 5.00152 5.03431 5.15824 5.27510 5.54687 5.96366 5.97829 6.17828 6.23939 6.26903 7.28990 8.06850 9.09474 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059542 B = 0.007254 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.142971 B = 3858.787439 C = 4194.840873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.561 5.561 3 C 0.063 3.937 4 C 0.050 3.950 5 N -0.539 5.539 6 C 0.052 3.948 7 C 0.098 3.902 8 H 0.024 0.976 9 C 0.075 3.925 10 O -0.317 6.317 11 C -0.378 4.378 12 H 0.068 0.932 13 C -0.036 4.036 14 N -0.932 5.932 15 Si 1.001 2.999 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.077 3.923 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.069 0.931 29 H -0.002 1.002 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 5.822 -2.330 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.078 4.078 5 N -0.264 5.264 6 C -0.096 4.096 7 C -0.011 4.011 8 H 0.042 0.958 9 C -0.002 4.002 10 O -0.232 6.232 11 C -0.457 4.457 12 H 0.086 0.914 13 C -0.230 4.230 14 N -0.577 5.577 15 Si 0.824 3.176 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.051 4.051 20 H 0.103 0.897 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.246 5.903 -2.554 14.725 hybrid contribution 0.713 -0.635 0.620 1.139 sum -12.533 5.268 -1.934 13.732 Atomic orbital electron populations 1.22402 0.85059 1.03091 1.01405 1.62102 1.09637 1.14384 1.42498 1.22192 0.93249 0.89089 1.01917 1.22324 0.95646 0.98709 0.91135 1.62291 1.08293 1.13154 1.42709 1.22192 0.86398 0.99073 1.01910 1.21567 0.94830 0.88666 0.96078 0.95824 1.22258 0.84666 0.96865 0.96460 1.85724 1.16826 1.75372 1.45306 1.21314 0.91721 1.32975 0.99668 0.91437 1.26076 0.96384 0.99929 1.00574 1.70194 1.07856 1.48787 1.30888 0.84759 0.78155 0.77483 0.77227 1.18408 1.20366 1.20261 1.21949 0.91453 0.99325 0.92389 0.89715 0.90743 0.95041 0.93881 0.87853 0.88813 0.95620 0.91730 0.91272 0.98328 0.95147 0.94667 0.93262 0.93726 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.60 127.69 1.23 1.75 16 2 N -0.56 -14.88 4.97 -921.94 -4.58 -19.46 16 3 C 0.06 1.56 5.62 86.31 0.49 2.05 16 4 C 0.05 1.52 5.61 86.31 0.48 2.01 16 5 N -0.54 -20.90 4.78 -896.54 -4.29 -25.19 16 6 C 0.05 2.35 8.33 127.69 1.06 3.42 16 7 C 0.10 3.89 2.38 44.92 0.11 4.00 16 8 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 9 C 0.08 3.47 5.32 71.98 0.38 3.85 16 10 O -0.32 -18.28 6.38 -81.96 -0.52 -18.81 16 11 C -0.38 -22.41 9.89 67.92 0.67 -21.74 16 12 H 0.07 3.78 7.77 -2.91 -0.02 3.76 16 13 C -0.04 -2.13 5.49 84.83 0.47 -1.66 16 14 N -0.93 -58.91 13.68 21.61 0.30 -58.62 16 15 Si 1.00 45.49 29.55 68.60 2.03 47.52 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C 0.08 2.36 4.90 86.31 0.42 2.78 16 20 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 1.98 8.13 -2.39 -0.02 1.96 16 25 H 0.09 2.49 8.06 -2.38 -0.02 2.47 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 28 H 0.07 3.73 5.80 -2.39 -0.01 3.71 16 29 H 0.00 -0.10 8.09 -2.39 -0.02 -0.12 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.38 273.40 -0.71 -70.10 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.04 Total: 8.00 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.31 Total: -3.54 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -8.57 Total: -103.27 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.52 Total: -18.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.38 -0.71 -70.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.194 kcal (2) G-P(sol) polarization free energy of solvation -69.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds