Wall clock time and date at job start Mon Mar 30 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46953 * 111.00189 * 2 1 4 4 C 1.53049 * 109.36554 * 176.81394 * 3 2 1 5 5 N 1.46957 * 109.36372 * 58.40157 * 4 3 2 6 6 C 1.46905 * 110.99699 * 176.81221 * 5 4 3 7 7 C 1.46953 * 110.87996 * 300.67998 * 5 4 3 8 8 H 1.09004 * 109.48806 * 299.33076 * 7 5 4 9 9 C 1.53002 * 109.48640 * 179.28990 * 7 5 4 10 10 O 1.42897 * 109.47413 * 66.80885 * 9 7 5 11 11 C 1.34919 * 117.00194 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00159 * 180.02562 * 11 10 9 14 14 N 1.31581 * 119.99820 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47071 * 89.99823 * 15 13 11 17 17 H 1.48500 * 109.46881 * 209.99723 * 15 13 11 18 18 H 1.48498 * 109.47192 * 329.99742 * 15 13 11 19 19 C 1.46957 * 110.99699 * 236.20185 * 2 1 3 20 20 H 1.09000 * 109.46900 * 183.79607 * 1 2 3 21 21 H 1.08994 * 109.47000 * 303.80110 * 1 2 3 22 22 H 1.08999 * 109.47245 * 63.79828 * 1 2 3 23 23 H 1.09006 * 109.48850 * 296.78347 * 3 2 1 24 24 H 1.09003 * 109.48602 * 56.82006 * 3 2 1 25 25 H 1.08999 * 109.48518 * 298.43707 * 4 3 2 26 26 H 1.08995 * 109.48785 * 178.37113 * 4 3 2 27 27 H 1.08997 * 109.46570 * 193.12630 * 6 5 4 28 28 H 1.09002 * 109.46988 * 73.12971 * 6 5 4 29 29 H 1.09001 * 109.46912 * 313.12493 * 6 5 4 30 30 H 1.09006 * 109.47023 * 186.80665 * 9 7 5 31 31 H 1.08997 * 109.47393 * 306.80499 * 9 7 5 32 32 H 0.96997 * 120.00195 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.48898 * 63.22007 * 19 2 1 34 34 H 1.09003 * 109.48998 * 303.15719 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 3.5234 -0.8061 -1.0599 8 1 3.8257 -1.3117 -0.1427 9 6 4.0769 -1.5653 -2.2674 10 8 5.4868 -1.7410 -2.1143 11 6 6.1331 -2.3963 -3.1008 12 1 5.5843 -2.7613 -3.9564 13 6 7.5015 -2.6020 -3.0157 14 7 8.1700 -2.1578 -1.9731 15 14 8.3962 -3.5099 -4.3813 16 1 8.8569 -2.5365 -5.4038 17 1 9.5681 -4.2250 -3.8151 18 1 7.4750 -4.4900 -5.0104 19 6 1.9956 -0.7632 -1.1401 20 1 -0.3633 -1.0254 0.0680 21 1 -0.3633 0.5717 0.8539 22 1 -0.3634 0.4537 -0.9220 23 1 1.6938 1.8774 -0.9174 24 1 1.6010 1.9129 0.8600 25 1 3.8254 0.8478 1.0105 26 1 3.9178 2.3447 0.0512 27 1 5.8824 0.2030 -2.0214 28 1 5.8825 -0.0855 -0.2650 29 1 5.8824 1.5799 -0.8933 30 1 3.5946 -2.5404 -2.3358 31 1 3.8782 -0.9972 -3.1761 32 1 9.1274 -2.3013 -1.9136 33 1 1.6937 -0.2820 -2.0704 34 1 1.6012 -1.7790 -1.1111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:59 Heat of formation + Delta-G solvation = -15.754478 kcal Electronic energy + Delta-G solvation = -15145.624674 eV Core-core repulsion = 12693.484010 eV Total energy + Delta-G solvation = -2452.140664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13654 -36.34070 -34.69647 -31.99517 -30.91991 -28.87718 -25.97621 -24.79766 -23.82915 -22.78564 -21.16231 -19.29344 -17.42608 -15.68769 -15.40176 -15.30522 -14.77470 -14.46494 -14.16892 -13.69373 -13.41556 -12.84729 -12.51464 -12.18815 -11.96296 -11.80101 -11.34546 -11.17748 -10.98408 -10.87186 -10.75736 -10.40584 -10.40184 -9.93674 -9.38935 -9.03263 -8.26621 -7.90786 -7.67054 -5.92801 -3.55209 3.32943 3.36020 3.39443 4.00129 4.34961 4.48834 5.08221 5.12753 5.31688 5.40547 5.44082 5.56585 5.61193 5.71439 5.75164 5.82529 5.94496 6.03673 6.17896 6.25293 6.34387 6.51688 6.59719 6.69250 6.86820 7.11795 7.12016 7.38626 7.52113 7.72907 7.80722 8.46347 9.51313 10.18662 11.27883 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059571 B = 0.007256 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.914219 B = 3858.191528 C = 4194.409118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.059 3.941 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.036 3.964 7 C 0.093 3.907 8 H 0.052 0.948 9 C 0.079 3.921 10 O -0.288 6.288 11 C -0.360 4.360 12 H 0.061 0.939 13 C 0.024 3.976 14 N -0.888 5.888 15 Si 0.923 3.077 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.277 1.277 19 C 0.066 3.934 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.023 0.977 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.027 0.973 31 H 0.031 0.969 32 H 0.257 0.743 33 H 0.041 0.959 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 5.399 2.831 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.076 4.076 5 N -0.264 5.264 6 C -0.111 4.111 7 C -0.016 4.016 8 H 0.070 0.930 9 C 0.000 4.000 10 O -0.203 6.203 11 C -0.439 4.439 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.531 5.531 15 Si 0.750 3.250 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.202 1.202 19 C -0.062 4.062 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.627 5.465 3.059 13.206 hybrid contribution 0.301 -0.556 -0.836 1.048 sum -11.326 4.909 2.223 12.543 Atomic orbital electron populations 1.22324 0.87586 1.02038 1.00184 1.62108 1.07377 1.14129 1.43464 1.22171 0.95345 0.89063 1.00386 1.22156 0.93616 0.98583 0.93198 1.62282 1.10128 1.13159 1.40785 1.22490 0.84388 0.98597 1.05584 1.21616 0.92125 0.89026 0.98867 0.93015 1.22047 0.86878 0.96015 0.95031 1.85730 1.14069 1.75448 1.45024 1.20796 0.90899 1.33046 0.99194 0.92172 1.24895 0.95665 0.99077 0.97735 1.70006 1.07474 1.47206 1.28424 0.86003 0.79265 0.79213 0.80499 1.20791 1.21019 1.20178 1.22103 0.94642 0.98052 0.91405 0.91466 0.91630 0.95800 0.94246 0.90854 0.94474 0.90756 0.87583 0.94812 0.94184 0.95495 0.95058 0.93323 0.94056 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.60 60.07 0.58 0.88 16 2 N -0.55 -7.93 4.97 -242.75 -1.21 -9.14 16 3 C 0.06 0.81 5.62 -3.77 -0.02 0.79 16 4 C 0.05 0.85 5.60 -3.77 -0.02 0.83 16 5 N -0.54 -10.41 4.78 -234.73 -1.12 -11.53 16 6 C 0.04 0.79 8.30 60.07 0.50 1.29 16 7 C 0.09 1.82 2.37 -67.66 -0.16 1.66 16 8 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 9 C 0.08 1.77 5.33 37.16 0.20 1.97 16 10 O -0.29 -7.99 6.37 -16.48 -0.11 -8.10 16 11 C -0.36 -10.46 9.89 30.88 0.31 -10.15 16 12 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 13 C 0.02 0.71 5.49 -17.51 -0.10 0.61 16 14 N -0.89 -27.26 13.67 55.48 0.76 -26.51 16 15 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.07 1.06 4.90 -3.77 -0.02 1.04 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 27 H 0.11 2.72 5.99 -51.93 -0.31 2.40 16 28 H 0.03 0.81 7.99 -51.93 -0.41 0.39 16 29 H 0.04 0.77 7.97 -51.93 -0.41 0.35 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -31.36 273.37 -7.07 -38.43 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.75 Total: -3.23 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 1.26 Total: -1.08 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.57 Total: -47.17 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.11 Total: -8.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.36 -7.07 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.675 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds