Wall clock time and date at job start Mon Mar 30 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46953 * 111.00189 * 2 1 4 4 C 1.53049 * 109.36554 * 176.81394 * 3 2 1 5 5 N 1.46957 * 109.36372 * 58.40157 * 4 3 2 6 6 C 1.46905 * 110.99699 * 176.81221 * 5 4 3 7 7 C 1.46953 * 110.87996 * 300.67998 * 5 4 3 8 8 H 1.09004 * 109.48806 * 299.33076 * 7 5 4 9 9 C 1.53002 * 109.48640 * 179.28990 * 7 5 4 10 10 O 1.42897 * 109.47413 * 66.80885 * 9 7 5 11 11 C 1.34919 * 117.00194 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.38639 * 120.00159 * 180.02562 * 11 10 9 14 14 N 1.31581 * 119.99820 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47071 * 89.99823 * 15 13 11 17 17 H 1.48500 * 109.46881 * 209.99723 * 15 13 11 18 18 H 1.48498 * 109.47192 * 329.99742 * 15 13 11 19 19 C 1.46957 * 110.99699 * 236.20185 * 2 1 3 20 20 H 1.09000 * 109.46900 * 183.79607 * 1 2 3 21 21 H 1.08994 * 109.47000 * 303.80110 * 1 2 3 22 22 H 1.08999 * 109.47245 * 63.79828 * 1 2 3 23 23 H 1.09006 * 109.48850 * 296.78347 * 3 2 1 24 24 H 1.09003 * 109.48602 * 56.82006 * 3 2 1 25 25 H 1.08999 * 109.48518 * 298.43707 * 4 3 2 26 26 H 1.08995 * 109.48785 * 178.37113 * 4 3 2 27 27 H 1.08997 * 109.46570 * 193.12630 * 6 5 4 28 28 H 1.09002 * 109.46988 * 73.12971 * 6 5 4 29 29 H 1.09001 * 109.46912 * 313.12493 * 6 5 4 30 30 H 1.09006 * 109.47023 * 186.80665 * 9 7 5 31 31 H 1.08997 * 109.47393 * 306.80499 * 9 7 5 32 32 H 0.96997 * 120.00195 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.48898 * 63.22007 * 19 2 1 34 34 H 1.09003 * 109.48998 * 303.15719 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 3.5234 -0.8061 -1.0599 8 1 3.8257 -1.3117 -0.1427 9 6 4.0769 -1.5653 -2.2674 10 8 5.4868 -1.7410 -2.1143 11 6 6.1331 -2.3963 -3.1008 12 1 5.5843 -2.7613 -3.9564 13 6 7.5015 -2.6020 -3.0157 14 7 8.1700 -2.1578 -1.9731 15 14 8.3962 -3.5099 -4.3813 16 1 8.8569 -2.5365 -5.4038 17 1 9.5681 -4.2250 -3.8151 18 1 7.4750 -4.4900 -5.0104 19 6 1.9956 -0.7632 -1.1401 20 1 -0.3633 -1.0254 0.0680 21 1 -0.3633 0.5717 0.8539 22 1 -0.3634 0.4537 -0.9220 23 1 1.6938 1.8774 -0.9174 24 1 1.6010 1.9129 0.8600 25 1 3.8254 0.8478 1.0105 26 1 3.9178 2.3447 0.0512 27 1 5.8824 0.2030 -2.0214 28 1 5.8825 -0.0855 -0.2650 29 1 5.8824 1.5799 -0.8933 30 1 3.5946 -2.5404 -2.3358 31 1 3.8782 -0.9972 -3.1761 32 1 9.1274 -2.3013 -1.9136 33 1 1.6937 -0.2820 -2.0704 34 1 1.6012 -1.7790 -1.1111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140557.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:59 Heat of formation + Delta-G solvation = -40.155270 kcal Electronic energy + Delta-G solvation = -15146.682772 eV Core-core repulsion = 12693.484010 eV Total energy + Delta-G solvation = -2453.198762 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54835 -38.17740 -36.17751 -33.99414 -32.59472 -30.18626 -27.67444 -26.28906 -25.72845 -24.17332 -22.59671 -20.76578 -19.53533 -17.43619 -17.10336 -16.74974 -16.14217 -15.77970 -15.70273 -15.38869 -14.86296 -14.60451 -14.31155 -13.57503 -13.38848 -13.15325 -13.01906 -12.80852 -12.69290 -12.34803 -12.23788 -12.15466 -11.82844 -11.61385 -11.38422 -11.04733 -10.07112 -9.40795 -9.24810 -8.13888 -5.81999 1.40955 1.46689 1.55503 2.33872 2.90028 2.96357 3.19740 3.65634 3.89399 4.06581 4.20259 4.33963 4.37195 4.47169 4.54906 4.63319 4.69179 4.71429 4.76188 4.76563 4.80113 4.94760 5.00193 5.03456 5.15948 5.27378 5.52945 5.96311 5.97810 6.17819 6.24105 6.26650 7.29225 8.07285 9.09664 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.059571 B = 0.007256 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.914219 B = 3858.191528 C = 4194.409118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.561 5.561 3 C 0.063 3.937 4 C 0.050 3.950 5 N -0.540 5.540 6 C 0.056 3.944 7 C 0.098 3.902 8 H 0.024 0.976 9 C 0.075 3.925 10 O -0.317 6.317 11 C -0.379 4.379 12 H 0.068 0.932 13 C -0.036 4.036 14 N -0.932 5.932 15 Si 1.000 3.000 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.077 3.923 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.103 0.897 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.065 0.935 28 H -0.001 1.001 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.259 0.741 33 H 0.044 0.956 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 5.821 2.393 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.286 5.286 3 C -0.065 4.065 4 C -0.078 4.078 5 N -0.265 5.265 6 C -0.092 4.092 7 C -0.011 4.011 8 H 0.042 0.958 9 C -0.002 4.002 10 O -0.232 6.232 11 C -0.458 4.458 12 H 0.085 0.915 13 C -0.229 4.229 14 N -0.577 5.577 15 Si 0.823 3.177 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.186 1.186 19 C -0.051 4.051 20 H 0.093 0.907 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.122 0.878 25 H 0.044 0.956 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.229 5.897 2.623 14.719 hybrid contribution 0.706 -0.636 -0.646 1.149 sum -12.523 5.261 1.977 13.726 Atomic orbital electron populations 1.22403 0.85061 1.03083 1.01413 1.62107 1.09635 1.14389 1.42481 1.22193 0.93259 0.89084 1.01918 1.22323 0.95640 0.98701 0.91138 1.62292 1.08296 1.13170 1.42732 1.22135 0.86371 0.98875 1.01842 1.21569 0.94826 0.88658 0.96072 0.95805 1.22257 0.84683 0.96846 0.96464 1.85722 1.16747 1.75545 1.45220 1.21274 0.91701 1.33092 0.99712 0.91462 1.26073 0.96376 0.99926 1.00559 1.70184 1.07819 1.48804 1.30890 0.84827 0.77756 0.78022 0.77058 1.19743 1.20579 1.18625 1.21947 0.91454 0.99323 0.92391 0.90745 0.89710 0.95044 0.93891 0.87844 0.95595 0.88794 0.91669 0.98213 0.91722 0.94715 0.95174 0.93266 0.93737 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.60 127.69 1.23 1.75 16 2 N -0.56 -14.87 4.97 -921.93 -4.58 -19.45 16 3 C 0.06 1.56 5.62 86.31 0.49 2.05 16 4 C 0.05 1.52 5.60 86.31 0.48 2.01 16 5 N -0.54 -20.91 4.78 -896.54 -4.29 -25.20 16 6 C 0.06 2.51 8.30 127.69 1.06 3.57 16 7 C 0.10 3.90 2.37 44.92 0.11 4.01 16 8 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 9 C 0.08 3.47 5.33 71.98 0.38 3.85 16 10 O -0.32 -18.32 6.37 -81.88 -0.52 -18.84 16 11 C -0.38 -22.50 9.89 67.92 0.67 -21.83 16 12 H 0.07 3.76 7.77 -2.91 -0.02 3.74 16 13 C -0.04 -2.11 5.49 84.83 0.47 -1.64 16 14 N -0.93 -58.94 13.67 21.61 0.30 -58.64 16 15 Si 1.00 45.50 29.55 68.60 2.03 47.53 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 C 0.08 2.36 4.90 86.31 0.42 2.78 16 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 22 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.10 1.97 8.13 -2.39 -0.02 1.95 16 25 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 2.48 8.04 -2.39 -0.02 2.46 16 27 H 0.06 3.50 5.99 -2.39 -0.01 3.49 16 28 H 0.00 -0.04 7.99 -2.39 -0.02 -0.06 16 29 H 0.06 2.51 7.97 -2.39 -0.02 2.49 16 30 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.45 273.37 -0.72 -70.17 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.04 Total: 7.88 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.30 Total: -3.45 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -8.57 Total: -103.29 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.52 Total: -18.84 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.45 -0.72 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140557.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.016 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds