Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46965 * 110.99835 * 2 1 4 4 C 1.53046 * 109.36010 * 183.19014 * 3 2 1 5 5 N 1.46955 * 109.36708 * 301.59592 * 4 3 2 6 6 C 1.46900 * 111.00268 * 183.19180 * 5 4 3 7 7 C 1.50700 * 109.47093 * 66.20051 * 6 5 4 8 8 H 1.08003 * 120.00286 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00021 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99437 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47079 * 90.00711 * 11 9 7 13 13 H 1.48507 * 109.46880 * 209.99772 * 11 9 7 14 14 H 1.48499 * 109.47369 * 329.99729 * 11 9 7 15 15 C 1.46961 * 110.88066 * 59.32167 * 5 4 3 16 16 C 1.46958 * 111.00088 * 123.79495 * 2 1 3 17 17 H 1.08994 * 109.50851 * 296.79301 * 16 2 1 18 18 C 1.53009 * 109.48658 * 56.84561 * 16 2 1 19 19 O 1.42900 * 109.47080 * 63.86691 * 18 16 2 20 20 H 1.09004 * 109.47326 * 289.77059 * 1 2 3 21 21 H 1.08996 * 109.47222 * 49.77024 * 1 2 3 22 22 H 1.09002 * 109.47030 * 169.77420 * 1 2 3 23 23 H 1.08998 * 109.48578 * 63.22150 * 3 2 1 24 24 H 1.08996 * 109.50265 * 303.16732 * 3 2 1 25 25 H 1.08998 * 109.48759 * 181.63070 * 4 3 2 26 26 H 1.09001 * 109.51321 * 61.57320 * 4 3 2 27 27 H 1.09003 * 109.46924 * 186.19953 * 6 5 4 28 28 H 1.08994 * 109.47086 * 306.20048 * 6 5 4 29 29 H 0.97000 * 119.99806 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.48738 * 180.71236 * 15 5 4 31 31 H 1.08998 * 109.48468 * 60.65373 * 15 5 4 32 32 H 1.08998 * 109.46721 * 303.86951 * 18 16 2 33 33 H 1.08994 * 109.46952 * 183.86683 * 18 16 2 34 34 H 0.96699 * 114.00029 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5659 1.0597 7 6 6.0214 1.9652 1.3064 8 1 5.3196 2.7736 1.4494 9 6 7.3770 2.2132 1.3507 10 7 8.2316 1.2286 1.1781 11 14 7.9996 3.9477 1.6558 12 1 8.1640 4.1650 3.1155 13 1 9.3082 4.1304 0.9778 14 1 7.0218 4.9267 1.1165 15 6 3.5234 -0.8061 1.0598 16 6 1.9957 -0.7631 1.1401 17 1 1.6938 -0.2823 2.0706 18 6 1.4421 -2.1890 1.0994 19 8 1.9136 -2.8495 -0.0768 20 1 -0.3634 0.3476 0.9671 21 1 -0.3633 0.6637 -0.7845 22 1 -0.3633 -1.0114 -0.1824 23 1 1.6937 1.8774 0.9174 24 1 1.6013 1.9132 -0.8600 25 1 3.9177 2.3448 -0.0513 26 1 3.8257 0.8481 -1.0106 27 1 5.8824 -0.0946 1.8470 28 1 5.8824 0.2145 0.0941 29 1 9.1853 1.4031 1.2089 30 1 3.9178 -1.3469 1.9200 31 1 3.8254 -1.3115 0.1425 32 1 0.3528 -2.1555 1.0853 33 1 1.7776 -2.7343 1.9815 34 1 1.6011 -3.7600 -0.1686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -34.400231 kcal Electronic energy + Delta-G solvation = -15071.612201 eV Core-core repulsion = 12618.662997 eV Total energy + Delta-G solvation = -2452.949205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.09415 -36.32339 -34.85600 -32.41560 -31.06699 -28.70892 -26.46902 -25.42257 -23.21910 -22.33871 -20.53901 -19.12437 -17.20002 -16.31805 -15.62947 -15.38681 -14.44787 -14.32845 -14.02511 -13.76448 -13.28963 -13.11196 -12.82661 -12.18863 -12.01066 -11.65749 -11.22693 -11.06043 -10.82313 -10.72773 -10.55376 -10.30074 -10.15386 -9.89868 -9.59125 -9.10633 -8.39349 -8.00268 -7.14559 -5.98358 -3.99705 3.34646 3.40239 3.43947 4.14073 4.44568 4.45682 4.92281 5.15853 5.26212 5.35852 5.44279 5.46113 5.55126 5.72622 5.75800 5.89477 5.97217 6.00585 6.10529 6.24948 6.59257 6.73022 6.77111 7.26738 7.35514 7.43333 7.45055 7.79374 7.84931 8.15008 8.27909 8.61420 9.07953 9.64193 11.12589 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049817 B = 0.007422 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.919250 B = 3771.427030 C = 4163.077119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.531 5.531 3 C 0.057 3.943 4 C 0.067 3.933 5 N -0.541 5.541 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.066 3.934 16 C 0.089 3.911 17 H 0.057 0.943 18 C 0.084 3.916 19 O -0.552 6.552 20 H 0.020 0.980 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.030 0.970 27 H 0.029 0.971 28 H -0.008 1.008 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 -4.952 -0.889 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.071 4.071 4 C -0.062 4.062 5 N -0.266 5.266 6 C 0.069 3.931 7 C -0.545 4.545 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.063 4.063 16 C -0.020 4.020 17 H 0.074 0.926 18 C 0.005 3.995 19 O -0.356 6.356 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.921 -4.394 -0.986 14.632 hybrid contribution 0.129 0.333 0.344 0.495 sum -13.793 -4.061 -0.642 14.392 Atomic orbital electron populations 1.22375 0.88503 1.01778 0.99712 1.62109 1.06552 1.14142 1.42782 1.22269 0.96526 0.88267 1.00012 1.21987 0.91666 1.00089 0.92442 1.62287 1.12073 1.10871 1.41418 1.19685 0.79791 0.97757 0.95848 1.21170 0.91281 0.93892 1.48180 0.91941 1.24997 0.96873 0.97233 0.95562 1.69966 1.02092 1.31301 1.50469 0.86500 0.78083 0.84564 0.78255 1.20687 1.21327 1.19880 1.21954 0.91594 0.91905 1.00802 1.21803 0.96574 0.91598 0.92040 0.92574 1.22257 0.96752 0.92992 0.87531 1.86687 1.75452 1.29674 1.43763 0.96175 0.91800 0.91676 0.94558 0.91112 0.89616 0.95224 0.95303 0.99006 0.92957 0.91484 0.93897 0.93891 0.93460 0.78696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.98 60.06 0.54 0.85 16 2 N -0.53 -8.65 4.72 -234.73 -1.11 -9.76 16 3 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 4 C 0.07 1.40 5.43 -3.77 -0.02 1.38 16 5 N -0.54 -12.46 4.70 -235.92 -1.11 -13.57 16 6 C 0.19 5.30 4.72 -4.98 -0.02 5.27 16 7 C -0.51 -14.59 8.47 -34.44 -0.29 -14.88 16 8 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 11 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.07 1.33 4.73 -3.77 -0.02 1.31 16 16 C 0.09 1.45 2.34 -67.65 -0.16 1.29 16 17 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.08 1.07 6.34 37.16 0.24 1.31 16 19 O -0.55 -7.60 12.73 -35.23 -0.45 -8.05 16 20 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 21 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 22 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 25 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.04 0.94 7.53 -51.93 -0.39 0.55 16 32 H 0.04 0.47 6.29 -51.93 -0.33 0.14 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.37 3.11 9.12 45.56 0.42 3.52 16 LS Contribution 271.07 15.07 4.08 4.08 Total: -1.00 -32.41 271.07 -7.43 -39.84 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -4.71 Total: -1.92 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.14 Total: -1.02 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -1.48 Total: -49.88 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.45 Total: -8.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.41 -7.43 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.436 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds