Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46965 * 110.99835 * 2 1 4 4 C 1.53046 * 109.36010 * 183.19014 * 3 2 1 5 5 N 1.46955 * 109.36708 * 301.59592 * 4 3 2 6 6 C 1.46900 * 111.00268 * 183.19180 * 5 4 3 7 7 C 1.50700 * 109.47093 * 66.20051 * 6 5 4 8 8 H 1.08003 * 120.00286 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00021 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99437 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47079 * 90.00711 * 11 9 7 13 13 H 1.48507 * 109.46880 * 209.99772 * 11 9 7 14 14 H 1.48499 * 109.47369 * 329.99729 * 11 9 7 15 15 C 1.46961 * 110.88066 * 59.32167 * 5 4 3 16 16 C 1.46958 * 111.00088 * 123.79495 * 2 1 3 17 17 H 1.08994 * 109.50851 * 296.79301 * 16 2 1 18 18 C 1.53009 * 109.48658 * 56.84561 * 16 2 1 19 19 O 1.42900 * 109.47080 * 63.86691 * 18 16 2 20 20 H 1.09004 * 109.47326 * 289.77059 * 1 2 3 21 21 H 1.08996 * 109.47222 * 49.77024 * 1 2 3 22 22 H 1.09002 * 109.47030 * 169.77420 * 1 2 3 23 23 H 1.08998 * 109.48578 * 63.22150 * 3 2 1 24 24 H 1.08996 * 109.50265 * 303.16732 * 3 2 1 25 25 H 1.08998 * 109.48759 * 181.63070 * 4 3 2 26 26 H 1.09001 * 109.51321 * 61.57320 * 4 3 2 27 27 H 1.09003 * 109.46924 * 186.19953 * 6 5 4 28 28 H 1.08994 * 109.47086 * 306.20048 * 6 5 4 29 29 H 0.97000 * 119.99806 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.48738 * 180.71236 * 15 5 4 31 31 H 1.08998 * 109.48468 * 60.65373 * 15 5 4 32 32 H 1.08998 * 109.46721 * 303.86951 * 18 16 2 33 33 H 1.08994 * 109.46952 * 183.86683 * 18 16 2 34 34 H 0.96699 * 114.00029 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5659 1.0597 7 6 6.0214 1.9652 1.3064 8 1 5.3196 2.7736 1.4494 9 6 7.3770 2.2132 1.3507 10 7 8.2316 1.2286 1.1781 11 14 7.9996 3.9477 1.6558 12 1 8.1640 4.1650 3.1155 13 1 9.3082 4.1304 0.9778 14 1 7.0218 4.9267 1.1165 15 6 3.5234 -0.8061 1.0598 16 6 1.9957 -0.7631 1.1401 17 1 1.6938 -0.2823 2.0706 18 6 1.4421 -2.1890 1.0994 19 8 1.9136 -2.8495 -0.0768 20 1 -0.3634 0.3476 0.9671 21 1 -0.3633 0.6637 -0.7845 22 1 -0.3633 -1.0114 -0.1824 23 1 1.6937 1.8774 0.9174 24 1 1.6013 1.9132 -0.8600 25 1 3.9177 2.3448 -0.0513 26 1 3.8257 0.8481 -1.0106 27 1 5.8824 -0.0946 1.8470 28 1 5.8824 0.2145 0.0941 29 1 9.1853 1.4031 1.2089 30 1 3.9178 -1.3469 1.9200 31 1 3.8254 -1.3115 0.1425 32 1 0.3528 -2.1555 1.0853 33 1 1.7776 -2.7343 1.9815 34 1 1.6011 -3.7600 -0.1686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -62.185346 kcal Electronic energy + Delta-G solvation = -15072.817054 eV Core-core repulsion = 12618.662997 eV Total energy + Delta-G solvation = -2454.154058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49818 -37.59143 -36.38575 -34.54466 -32.44470 -30.41709 -28.16526 -26.78421 -24.89765 -23.94166 -22.21023 -20.56506 -18.54394 -18.21966 -17.13100 -16.75354 -16.32098 -15.71081 -15.58949 -15.25547 -14.82244 -14.59032 -14.12273 -14.03533 -13.35434 -13.01576 -12.94032 -12.79284 -12.58749 -12.34556 -12.26535 -12.14587 -11.68942 -11.52446 -11.14800 -10.74090 -10.63244 -9.25309 -9.05953 -8.22030 -6.33361 1.40334 1.42752 1.53917 2.39382 2.93913 3.09661 3.25017 3.46864 3.95673 4.05649 4.14906 4.34670 4.41256 4.49580 4.54869 4.63636 4.67802 4.70559 4.79959 4.97073 5.03581 5.05206 5.06382 5.19946 5.25577 5.61947 5.99531 6.08751 6.14927 6.34227 6.58410 6.82264 7.05930 7.36530 8.89673 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049817 B = 0.007422 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.919250 B = 3771.427030 C = 4163.077119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.068 3.932 4 C 0.068 3.932 5 N -0.545 5.545 6 C 0.210 3.790 7 C -0.525 4.525 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.975 3.025 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.262 1.262 15 C 0.068 3.932 16 C 0.090 3.910 17 H 0.059 0.941 18 C 0.089 3.911 19 O -0.580 6.580 20 H 0.032 0.968 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.002 0.998 28 H -0.045 1.045 29 H 0.265 0.735 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.427 -4.202 -0.558 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.060 4.060 4 C -0.061 4.061 5 N -0.270 5.270 6 C 0.083 3.917 7 C -0.563 4.563 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.799 3.201 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.061 4.061 16 C -0.018 4.018 17 H 0.077 0.923 18 C 0.010 3.990 19 O -0.387 6.387 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.020 0.980 28 H -0.027 1.027 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.962 -3.670 -0.658 16.392 hybrid contribution 0.740 0.016 0.207 0.769 sum -15.222 -3.653 -0.451 15.661 Atomic orbital electron populations 1.22448 0.85593 1.03186 1.00878 1.62084 1.09138 1.13235 1.42846 1.22136 0.93083 0.89532 1.01257 1.21991 0.94925 0.98484 0.90670 1.62254 1.09278 1.13013 1.42405 1.19340 0.82785 0.96747 0.92794 1.21446 0.91914 0.94368 1.48593 0.91710 1.25996 0.96960 1.02067 0.94828 1.70104 1.02586 1.33905 1.51052 0.85303 0.77584 0.78726 0.78509 1.19664 1.20675 1.18661 1.22000 0.94910 0.89793 0.99386 1.21791 0.93335 0.94383 0.92340 0.92308 1.22229 0.98158 0.90703 0.87873 1.86624 1.76234 1.31660 1.44179 0.94982 0.90534 0.90229 0.94264 0.88670 0.91116 0.97260 0.97956 1.02686 0.92599 0.91796 0.96324 0.90895 0.91994 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 8.98 127.69 1.15 1.71 16 2 N -0.55 -16.70 4.72 -896.54 -4.23 -20.93 16 3 C 0.07 2.22 5.61 86.31 0.48 2.71 16 4 C 0.07 2.91 5.43 86.31 0.47 3.38 16 5 N -0.54 -25.89 4.70 -900.31 -4.23 -30.12 16 6 C 0.21 12.04 4.72 85.56 0.40 12.45 16 7 C -0.53 -31.04 8.47 25.60 0.22 -30.82 16 8 H 0.06 3.72 7.13 -2.91 -0.02 3.70 16 9 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 10 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 11 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.07 2.78 4.73 86.31 0.41 3.18 16 16 C 0.09 2.82 2.34 44.92 0.11 2.92 16 17 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 18 C 0.09 2.04 6.34 71.99 0.46 2.50 16 19 O -0.58 -14.88 12.73 -148.98 -1.90 -16.78 16 20 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 21 H 0.08 1.46 8.02 -2.39 -0.02 1.45 16 22 H 0.08 1.50 6.55 -2.39 -0.02 1.48 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 25 H 0.07 3.18 6.79 -2.39 -0.02 3.17 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 28 H -0.04 -2.82 8.12 -2.39 -0.02 -2.84 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.06 2.59 8.07 -2.39 -0.02 2.57 16 31 H 0.02 0.85 7.53 -2.39 -0.02 0.83 16 32 H 0.07 1.27 6.29 -2.39 -0.02 1.26 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.39 5.71 9.12 -74.06 -0.68 5.03 16 Total: -1.00 -71.62 271.07 -3.50 -75.11 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.40 Total: 4.99 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.15 Total: -1.54 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -8.17 Total: -109.03 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.90 Total: -16.78 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.62 -3.50 -75.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.928 kcal (2) G-P(sol) polarization free energy of solvation -71.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds