Wall clock time and date at job start Mon Mar 30 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 110.99730 * 2 1 4 4 C 1.53052 * 109.36609 * 176.81140 * 3 2 1 5 5 N 1.46953 * 109.36377 * 58.39377 * 4 3 2 6 6 C 1.46904 * 111.00144 * 176.81514 * 5 4 3 7 7 C 1.50698 * 109.46912 * 66.04512 * 6 5 4 8 8 H 1.08000 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00503 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99868 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47094 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47177 * 299.99240 * 11 9 7 14 14 H 1.48501 * 109.47552 * 59.99845 * 11 9 7 15 15 C 1.46961 * 110.88422 * 300.68083 * 5 4 3 16 16 C 1.46953 * 111.00144 * 236.19416 * 2 1 3 17 17 H 1.08997 * 109.48347 * 63.22254 * 16 2 1 18 18 C 1.52996 * 109.48919 * 303.17638 * 16 2 1 19 19 O 1.42898 * 109.47146 * 296.10935 * 18 16 2 20 20 H 1.08990 * 109.47262 * 66.74534 * 1 2 3 21 21 H 1.08998 * 109.46694 * 186.73967 * 1 2 3 22 22 H 1.08997 * 109.47200 * 306.74119 * 1 2 3 23 23 H 1.09001 * 109.49056 * 56.83849 * 3 2 1 24 24 H 1.09004 * 109.50281 * 296.78576 * 3 2 1 25 25 H 1.08998 * 109.48281 * 298.43391 * 4 3 2 26 26 H 1.08997 * 109.50681 * 178.37521 * 4 3 2 27 27 H 1.09007 * 109.46718 * 306.04995 * 6 5 4 28 28 H 1.08995 * 109.47436 * 186.04970 * 6 5 4 29 29 H 0.97001 * 119.99582 * 359.97438 * 10 9 7 30 30 H 1.09000 * 109.49091 * 179.28238 * 15 5 4 31 31 H 1.08997 * 109.48826 * 299.35386 * 15 5 4 32 32 H 1.08999 * 109.47059 * 56.11454 * 18 16 2 33 33 H 1.08998 * 109.46774 * 176.11178 * 18 16 2 34 34 H 0.96703 * 114.00110 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0501 0.5659 -1.0596 6 6 5.5192 0.5659 -1.0596 7 6 6.0214 -0.1920 0.1421 8 1 5.3196 -0.6303 0.8362 9 6 7.3769 -0.3259 0.3555 10 7 8.2316 0.2073 -0.4900 11 14 7.9996 -1.2660 1.8447 12 1 9.4846 -1.2659 1.8448 13 1 7.5041 -0.6147 3.0839 14 1 7.5052 -2.6652 1.7892 15 6 3.5236 -0.8061 -1.0596 16 6 1.9957 -0.7633 -1.1400 17 1 1.6938 -0.2822 -2.0702 18 6 1.4418 -2.1889 -1.0993 19 8 1.9133 -2.8498 0.0767 20 1 -0.3633 0.4057 -0.9441 21 1 -0.3632 -1.0206 0.1206 22 1 -0.3633 0.6147 0.8235 23 1 1.6012 1.9129 0.8602 24 1 1.6937 1.8777 -0.9172 25 1 3.8253 0.8481 1.0106 26 1 3.9180 2.3449 0.0514 27 1 5.8824 1.5929 -1.0194 28 1 5.8825 0.0874 -1.9690 29 1 7.9083 0.6945 -1.2639 30 1 3.9179 -1.3470 -1.9198 31 1 3.8255 -1.3114 -0.1422 32 1 0.3525 -2.1552 -1.0852 33 1 1.7770 -2.7342 -1.9816 34 1 1.6011 -3.7604 0.1681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:37 Heat of formation + Delta-G solvation = -37.438121 kcal Electronic energy + Delta-G solvation = -15337.283248 eV Core-core repulsion = 12884.202310 eV Total energy + Delta-G solvation = -2453.080937 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.11297 -36.31670 -35.02969 -32.46272 -31.02981 -28.56884 -25.88692 -25.30109 -23.46752 -22.27296 -20.76707 -19.13384 -17.18639 -16.70490 -15.62119 -15.27539 -14.42498 -14.16053 -14.02962 -13.64518 -13.39776 -12.97062 -12.75880 -12.29126 -11.99973 -11.44057 -11.32140 -10.93506 -10.90004 -10.71055 -10.45399 -10.09525 -10.02249 -9.90309 -9.59449 -9.08305 -8.31481 -7.98796 -7.05536 -6.31920 -4.04576 3.47709 3.49153 3.67837 4.15190 4.51795 4.57923 4.92349 5.20514 5.27169 5.39087 5.45218 5.50138 5.55210 5.73545 5.79021 5.88942 5.97204 6.01042 6.09264 6.30863 6.58584 6.83256 7.01475 7.07641 7.27198 7.37911 7.40950 7.87845 7.93312 8.19802 8.22869 8.58694 8.87259 9.68203 11.05297 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.009297 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.860657 B = 3010.862666 C = 3322.064409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.059 3.941 4 C 0.064 3.936 5 N -0.543 5.543 6 C 0.176 3.824 7 C -0.625 4.625 8 H 0.055 0.945 9 C 0.020 3.980 10 N -0.912 5.912 11 Si 1.066 2.934 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.075 3.925 16 C 0.086 3.914 17 H 0.051 0.949 18 C 0.084 3.916 19 O -0.549 6.549 20 H 0.018 0.982 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.862 -2.673 -0.603 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.069 4.069 4 C -0.065 4.065 5 N -0.266 5.266 6 C 0.050 3.950 7 C -0.664 4.664 8 H 0.073 0.927 9 C -0.184 4.184 10 N -0.548 5.548 11 Si 0.894 3.106 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.214 1.214 15 C -0.053 4.053 16 C -0.022 4.022 17 H 0.069 0.931 18 C 0.006 3.994 19 O -0.352 6.352 20 H 0.037 0.963 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -13.171 -2.561 0.255 13.420 hybrid contribution -1.742 -0.021 -0.939 1.979 sum -14.913 -2.582 -0.684 15.150 Atomic orbital electron populations 1.22383 0.88545 1.01771 0.99688 1.62053 1.06434 1.13837 1.42973 1.22231 0.96451 0.88498 0.99696 1.21923 0.91620 0.98334 0.94643 1.62627 1.10862 1.12581 1.40566 1.19798 0.82151 0.96482 0.96539 1.22580 0.94691 1.38081 1.11004 0.92682 1.25765 0.93402 0.97007 1.02251 1.70800 1.37200 1.33411 1.13374 0.83587 0.76047 0.75990 0.74954 1.20841 1.21492 1.21438 1.21832 0.90006 0.91375 1.02121 1.21863 0.97207 0.91598 0.91580 0.93142 1.22226 0.96516 0.93003 0.87703 1.86727 1.75423 1.29552 1.43508 0.96349 0.91562 0.91796 0.91138 0.95022 0.93206 0.91592 0.96254 0.96226 0.92158 0.91983 0.91685 0.94027 0.93578 0.78756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.06 60.07 0.54 0.86 16 2 N -0.53 -8.95 4.72 -234.73 -1.11 -10.06 16 3 C 0.06 1.02 5.62 -3.76 -0.02 1.00 16 4 C 0.06 1.34 5.33 -3.77 -0.02 1.32 16 5 N -0.54 -12.44 4.92 -235.91 -1.16 -13.60 16 6 C 0.18 4.71 4.46 -4.97 -0.02 4.69 16 7 C -0.62 -18.04 7.68 -34.44 -0.26 -18.30 16 8 H 0.06 1.63 5.80 -52.49 -0.30 1.33 16 9 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 10 N -0.91 -28.19 13.65 55.43 0.76 -27.44 16 11 Si 1.07 26.14 29.90 -169.99 -5.08 21.05 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.08 1.61 4.34 -3.76 -0.02 1.60 16 16 C 0.09 1.48 2.35 -67.66 -0.16 1.32 16 17 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 18 C 0.08 1.18 6.34 37.16 0.24 1.41 16 19 O -0.55 -8.44 12.73 -35.23 -0.45 -8.89 16 20 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 22 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 23 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 26 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 27 H 0.02 0.54 7.96 -51.93 -0.41 0.13 16 28 H 0.02 0.55 8.01 -51.93 -0.42 0.14 16 29 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.61 5.84 -51.93 -0.30 1.31 16 32 H 0.04 0.49 6.21 -51.93 -0.32 0.16 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.37 3.66 9.12 45.56 0.42 4.08 16 LS Contribution 266.33 15.07 4.01 4.01 Total: -1.00 -32.78 266.33 -7.35 -40.13 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.50 Total: 0.39 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 0.18 Total: -5.60 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -1.51 Total: -51.09 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.45 Total: -8.89 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.78 -7.35 -40.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.691 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds