Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 110.99730 * 2 1 4 4 C 1.53052 * 109.36609 * 176.81140 * 3 2 1 5 5 N 1.46953 * 109.36377 * 58.39377 * 4 3 2 6 6 C 1.46904 * 111.00144 * 176.81514 * 5 4 3 7 7 C 1.50698 * 109.46912 * 66.04512 * 6 5 4 8 8 H 1.08000 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00503 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99868 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47094 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47177 * 299.99240 * 11 9 7 14 14 H 1.48501 * 109.47552 * 59.99845 * 11 9 7 15 15 C 1.46961 * 110.88422 * 300.68083 * 5 4 3 16 16 C 1.46953 * 111.00144 * 236.19416 * 2 1 3 17 17 H 1.08997 * 109.48347 * 63.22254 * 16 2 1 18 18 C 1.52996 * 109.48919 * 303.17638 * 16 2 1 19 19 O 1.42898 * 109.47146 * 296.10935 * 18 16 2 20 20 H 1.08990 * 109.47262 * 66.74534 * 1 2 3 21 21 H 1.08998 * 109.46694 * 186.73967 * 1 2 3 22 22 H 1.08997 * 109.47200 * 306.74119 * 1 2 3 23 23 H 1.09001 * 109.49056 * 56.83849 * 3 2 1 24 24 H 1.09004 * 109.50281 * 296.78576 * 3 2 1 25 25 H 1.08998 * 109.48281 * 298.43391 * 4 3 2 26 26 H 1.08997 * 109.50681 * 178.37521 * 4 3 2 27 27 H 1.09007 * 109.46718 * 306.04995 * 6 5 4 28 28 H 1.08995 * 109.47436 * 186.04970 * 6 5 4 29 29 H 0.97001 * 119.99582 * 359.97438 * 10 9 7 30 30 H 1.09000 * 109.49091 * 179.28238 * 15 5 4 31 31 H 1.08997 * 109.48826 * 299.35386 * 15 5 4 32 32 H 1.08999 * 109.47059 * 56.11454 * 18 16 2 33 33 H 1.08998 * 109.46774 * 176.11178 * 18 16 2 34 34 H 0.96703 * 114.00110 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 0.0803 5 7 4.0501 0.5659 -1.0596 6 6 5.5192 0.5659 -1.0596 7 6 6.0214 -0.1920 0.1421 8 1 5.3196 -0.6303 0.8362 9 6 7.3769 -0.3259 0.3555 10 7 8.2316 0.2073 -0.4900 11 14 7.9996 -1.2660 1.8447 12 1 9.4846 -1.2659 1.8448 13 1 7.5041 -0.6147 3.0839 14 1 7.5052 -2.6652 1.7892 15 6 3.5236 -0.8061 -1.0596 16 6 1.9957 -0.7633 -1.1400 17 1 1.6938 -0.2822 -2.0702 18 6 1.4418 -2.1889 -1.0993 19 8 1.9133 -2.8498 0.0767 20 1 -0.3633 0.4057 -0.9441 21 1 -0.3632 -1.0206 0.1206 22 1 -0.3633 0.6147 0.8235 23 1 1.6012 1.9129 0.8602 24 1 1.6937 1.8777 -0.9172 25 1 3.8253 0.8481 1.0106 26 1 3.9180 2.3449 0.0514 27 1 5.8824 1.5929 -1.0194 28 1 5.8825 0.0874 -1.9690 29 1 7.9083 0.6945 -1.2639 30 1 3.9179 -1.3470 -1.9198 31 1 3.8255 -1.3114 -0.1422 32 1 0.3525 -2.1552 -1.0852 33 1 1.7770 -2.7342 -1.9816 34 1 1.6011 -3.7604 0.1681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -65.773077 kcal Electronic energy + Delta-G solvation = -15338.511944 eV Core-core repulsion = 12884.202310 eV Total energy + Delta-G solvation = -2454.309633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57860 -37.71287 -36.57549 -34.58706 -32.44970 -30.19481 -27.52130 -26.91294 -25.25216 -23.91518 -22.39395 -20.68510 -18.93785 -18.24455 -16.93384 -16.80216 -16.11503 -15.79197 -15.67134 -15.44364 -14.68134 -14.63263 -14.21935 -13.83783 -13.38821 -13.20649 -12.88645 -12.81264 -12.58807 -12.29277 -12.21822 -11.98330 -11.63129 -11.36489 -11.27695 -10.76332 -10.60061 -9.26303 -9.04452 -8.66400 -6.43579 1.47519 1.55105 1.75635 2.51402 2.91762 3.10512 3.20870 3.45679 3.95714 4.02053 4.11540 4.36335 4.40307 4.48125 4.50776 4.60877 4.66431 4.66992 4.75679 4.91822 4.95657 5.03403 5.05497 5.09443 5.26017 5.77024 5.93323 6.06369 6.19950 6.35134 6.39369 6.48411 7.04755 7.37544 8.67236 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.009297 C = 0.008426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.860657 B = 3010.862666 C = 3322.064409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.549 5.549 3 C 0.069 3.931 4 C 0.064 3.936 5 N -0.540 5.540 6 C 0.185 3.815 7 C -0.628 4.628 8 H 0.044 0.956 9 C -0.030 4.030 10 N -0.932 5.932 11 Si 1.113 2.887 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.081 3.919 16 C 0.089 3.911 17 H 0.060 0.940 18 C 0.088 3.912 19 O -0.579 6.579 20 H 0.033 0.967 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.042 0.958 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.002 0.998 28 H 0.000 1.000 29 H 0.256 0.744 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 -3.311 -0.028 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.275 5.275 3 C -0.059 4.059 4 C -0.065 4.065 5 N -0.264 5.264 6 C 0.058 3.942 7 C -0.666 4.666 8 H 0.062 0.938 9 C -0.229 4.229 10 N -0.569 5.569 11 Si 0.935 3.065 12 H -0.203 1.203 13 H -0.199 1.199 14 H -0.199 1.199 15 C -0.048 4.048 16 C -0.020 4.020 17 H 0.077 0.923 18 C 0.009 3.991 19 O -0.387 6.387 20 H 0.051 0.949 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.392 -3.207 0.819 15.744 hybrid contribution -1.107 0.189 -1.141 1.601 sum -16.499 -3.018 -0.322 16.776 Atomic orbital electron populations 1.22448 0.85558 1.03060 1.01014 1.62020 1.09118 1.13310 1.43014 1.22122 0.92969 0.89500 1.01289 1.21968 0.94994 0.97360 0.92148 1.62613 1.08315 1.13948 1.41492 1.19535 0.84967 0.94740 0.94918 1.22744 0.94733 1.37867 1.11280 0.93789 1.27251 0.94015 0.97256 1.04347 1.70924 1.37499 1.34676 1.13791 0.82981 0.75846 0.75543 0.72172 1.20319 1.19857 1.19897 1.21777 0.93694 0.89667 0.99664 1.21820 0.93627 0.94273 0.92231 0.92275 1.22246 0.98125 0.90897 0.87809 1.86663 1.76295 1.31524 1.44168 0.94871 0.90339 0.90521 0.88771 0.93966 0.96544 0.91722 0.98027 0.98227 0.93439 0.92957 0.95464 0.90742 0.92274 0.76173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.06 127.69 1.16 1.74 16 2 N -0.55 -17.27 4.72 -896.55 -4.23 -21.50 16 3 C 0.07 2.24 5.62 86.31 0.48 2.72 16 4 C 0.06 2.72 5.33 86.31 0.46 3.18 16 5 N -0.54 -25.28 4.92 -900.27 -4.43 -29.71 16 6 C 0.19 10.32 4.46 85.56 0.38 10.70 16 7 C -0.63 -37.33 7.68 25.60 0.20 -37.13 16 8 H 0.04 2.69 5.80 -2.91 -0.02 2.67 16 9 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 10 N -0.93 -58.88 13.65 21.45 0.29 -58.58 16 11 Si 1.11 52.76 29.90 68.60 2.05 54.81 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 C 0.08 3.49 4.34 86.31 0.37 3.87 16 16 C 0.09 2.90 2.35 44.92 0.11 3.01 16 17 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 18 C 0.09 2.20 6.34 71.98 0.46 2.66 16 19 O -0.58 -16.74 12.73 -148.98 -1.90 -18.64 16 20 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 21 H 0.08 1.55 6.34 -2.39 -0.02 1.53 16 22 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 23 H 0.09 2.60 8.10 -2.39 -0.02 2.58 16 24 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.02 0.79 6.95 -2.39 -0.02 0.78 16 26 H 0.06 2.69 8.11 -2.39 -0.02 2.67 16 27 H 0.00 0.10 7.96 -2.38 -0.02 0.08 16 28 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 29 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 30 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.03 1.38 5.84 -2.39 -0.01 1.37 16 32 H 0.07 1.41 6.21 -2.39 -0.01 1.39 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.39 6.89 9.12 -74.06 -0.68 6.21 16 Total: -1.00 -72.13 266.33 -3.62 -75.76 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.51 Total: 8.45 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.08 Total: -10.59 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -8.36 Total: -109.79 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.90 Total: -18.64 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -72.13 -3.62 -75.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.983 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds