Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99872 * 2 1 4 4 C 1.53052 * 109.36335 * 176.81503 * 3 2 1 5 5 N 1.46957 * 109.36564 * 58.40255 * 4 3 2 6 6 C 1.46950 * 110.87982 * 300.67906 * 5 4 3 7 7 C 1.46957 * 110.99868 * 236.20374 * 2 1 3 8 8 H 1.09007 * 109.48981 * 63.19887 * 7 2 1 9 9 C 1.52998 * 109.49059 * 303.15241 * 7 2 1 10 10 O 1.42897 * 109.46795 * 295.00142 * 9 7 2 11 11 C 1.42905 * 113.99899 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 H 1.08997 * 109.46524 * 183.79960 * 1 2 3 21 21 H 1.08996 * 109.46715 * 303.79883 * 1 2 3 22 22 H 1.09000 * 109.47064 * 63.79743 * 1 2 3 23 23 H 1.09006 * 109.48911 * 296.78299 * 3 2 1 24 24 H 1.09000 * 109.48686 * 56.84551 * 3 2 1 25 25 H 1.09007 * 109.48113 * 178.36905 * 4 3 2 26 26 H 1.09003 * 109.48772 * 298.43128 * 4 3 2 27 27 H 1.00902 * 110.99564 * 64.54679 * 5 4 3 28 28 H 1.08997 * 109.49108 * 299.35265 * 6 5 4 29 29 H 1.09000 * 109.48738 * 179.29005 * 6 5 4 30 30 H 1.08995 * 109.47274 * 175.00179 * 9 7 2 31 31 H 1.09002 * 109.46559 * 54.99644 * 9 7 2 32 32 H 1.09007 * 109.46810 * 59.99780 * 11 10 9 33 33 H 1.09003 * 109.46936 * 300.00543 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0802 5 7 4.0501 0.5660 -1.0599 6 6 3.5235 -0.8059 -1.0599 7 6 1.9957 -0.7632 -1.1401 8 1 1.6934 -0.2821 -2.0705 9 6 1.4422 -2.1889 -1.0994 10 8 1.9350 -2.8580 0.0631 11 6 1.4749 -4.2043 0.1977 12 6 2.0526 -4.8096 1.4510 13 1 2.7054 -4.2248 2.0820 14 6 1.7477 -6.1103 1.7922 15 7 0.9523 -6.8225 1.0242 16 14 2.4644 -6.8609 3.3454 17 1 3.7615 -7.5106 3.0283 18 1 2.6789 -5.7950 4.3569 19 1 1.5225 -7.8738 3.8858 20 1 -0.3632 -1.0254 0.0681 21 1 -0.3632 0.5717 0.8540 22 1 -0.3633 0.4538 -0.9221 23 1 1.6937 1.8775 -0.9174 24 1 1.6013 1.9128 0.8603 25 1 3.9177 2.3450 0.0512 26 1 3.8254 0.8480 1.0106 27 1 3.8464 1.0315 -1.9316 28 1 3.8254 -1.3114 -0.1427 29 1 3.9178 -1.3468 -1.9202 30 1 1.7610 -2.7281 -1.9914 31 1 0.3533 -2.1551 -1.0649 32 1 1.7940 -4.7855 -0.6675 33 1 0.3866 -4.2119 0.2591 34 1 0.7382 -7.7376 1.2641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -37.964934 kcal Electronic energy + Delta-G solvation = -14911.962944 eV Core-core repulsion = 12458.859162 eV Total energy + Delta-G solvation = -2453.103782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35607 -36.37822 -34.17628 -32.74835 -31.37016 -27.80011 -26.99706 -25.46564 -23.28100 -22.28274 -21.79210 -19.80251 -16.43760 -16.08359 -15.76867 -15.55070 -14.74878 -14.61406 -14.30684 -13.92349 -13.74706 -13.13285 -12.73306 -12.09762 -12.04286 -11.77557 -11.34178 -11.18831 -11.12439 -10.95027 -10.80284 -10.70530 -10.37002 -9.96724 -9.05895 -8.79613 -8.40570 -8.10033 -8.03460 -6.07431 -4.08287 3.33322 3.38109 3.44191 3.95464 4.36495 4.38595 4.83535 5.07209 5.08693 5.20669 5.29199 5.29422 5.46586 5.58507 5.65288 5.68730 5.73795 5.92992 6.00958 6.07269 6.13706 6.23713 6.55199 7.01038 7.12145 7.18310 7.25791 7.45814 7.47356 7.84454 8.19995 8.63486 9.06178 9.56499 11.04281 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041878 B = 0.006862 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.447432 B = 4079.748949 C = 4228.609354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.520 5.520 3 C 0.018 3.982 4 C 0.059 3.941 5 N -0.687 5.687 6 C 0.067 3.933 7 C 0.055 3.945 8 H 0.039 0.961 9 C 0.070 3.930 10 O -0.376 6.376 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.271 1.271 19 H -0.286 1.286 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.016 0.984 23 H 0.024 0.976 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.330 0.670 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 14.512 -4.799 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.245 5.245 3 C -0.112 4.112 4 C -0.071 4.071 5 N -0.314 5.314 6 C -0.062 4.062 7 C -0.055 4.055 8 H 0.057 0.943 9 C -0.009 4.009 10 O -0.295 6.295 11 C 0.120 3.880 12 C -0.548 4.548 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.196 1.196 19 H -0.212 1.212 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.763 14.014 -3.913 14.656 hybrid contribution -1.359 -0.114 -0.541 1.467 sum 0.404 13.900 -4.454 14.602 Atomic orbital electron populations 1.22430 0.87447 1.03062 0.99476 1.61989 1.07608 1.12053 1.42891 1.22872 0.97955 0.90031 1.00352 1.22104 0.90990 0.98148 0.95854 1.60792 1.61425 1.03669 1.05537 1.22103 0.90061 0.89467 1.04606 1.22465 0.98076 0.94143 0.90806 0.94335 1.22242 0.96962 0.91069 0.90577 1.87943 1.71741 1.28712 1.41133 1.20183 0.94033 0.76947 0.96843 1.21058 1.29244 0.97162 1.07336 0.91481 1.24948 0.95293 0.96732 0.97595 1.69968 1.36098 1.09783 1.38179 0.86348 0.78722 0.78828 0.82680 1.20482 1.19598 1.21156 0.90286 0.91594 0.96523 0.95756 0.90424 0.90718 0.89659 0.85318 0.88098 0.90512 0.94182 0.94375 0.97963 0.98022 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.14 60.07 0.55 0.89 16 2 N -0.52 -8.18 4.73 -234.72 -1.11 -9.29 16 3 C 0.02 0.22 5.62 -3.76 -0.02 0.20 16 4 C 0.06 0.73 6.72 -3.77 -0.03 0.70 16 5 N -0.69 -9.02 6.91 -113.63 -0.79 -9.80 16 6 C 0.07 1.04 5.83 -3.77 -0.02 1.02 16 7 C 0.06 0.87 2.35 -67.65 -0.16 0.71 16 8 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 9 C 0.07 1.32 5.28 37.16 0.20 1.52 16 10 O -0.38 -9.08 9.36 -35.23 -0.33 -9.41 16 11 C 0.19 5.37 5.69 36.00 0.20 5.58 16 12 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 13 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H 0.08 1.28 6.14 -51.93 -0.32 0.96 16 21 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.33 3.68 8.89 -39.29 -0.35 3.33 16 28 H 0.10 1.91 7.51 -51.93 -0.39 1.52 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.71 6.08 -51.93 -0.32 0.39 16 32 H 0.00 0.07 8.14 -51.92 -0.42 -0.35 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 274.94 15.07 4.14 4.14 Total: -1.00 -31.37 274.94 -7.63 -39.00 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.57 Total: -1.90 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.30 Total: -3.38 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.16 Total: -45.60 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.33 Total: -9.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.37 -7.63 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.035 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds