Wall clock time and date at job start Mon Mar 30 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99872 * 2 1 4 4 C 1.53052 * 109.36335 * 176.81503 * 3 2 1 5 5 N 1.46957 * 109.36564 * 58.40255 * 4 3 2 6 6 C 1.46950 * 110.87982 * 300.67906 * 5 4 3 7 7 C 1.46957 * 110.99868 * 236.20374 * 2 1 3 8 8 H 1.09007 * 109.48981 * 63.19887 * 7 2 1 9 9 C 1.52998 * 109.49059 * 303.15241 * 7 2 1 10 10 O 1.42897 * 109.46795 * 295.00142 * 9 7 2 11 11 C 1.42905 * 113.99899 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 H 1.08997 * 109.46524 * 183.79960 * 1 2 3 21 21 H 1.08996 * 109.46715 * 303.79883 * 1 2 3 22 22 H 1.09000 * 109.47064 * 63.79743 * 1 2 3 23 23 H 1.09006 * 109.48911 * 296.78299 * 3 2 1 24 24 H 1.09000 * 109.48686 * 56.84551 * 3 2 1 25 25 H 1.09007 * 109.48113 * 178.36905 * 4 3 2 26 26 H 1.09003 * 109.48772 * 298.43128 * 4 3 2 27 27 H 1.00902 * 110.99564 * 64.54679 * 5 4 3 28 28 H 1.08997 * 109.49108 * 299.35265 * 6 5 4 29 29 H 1.09000 * 109.48738 * 179.29005 * 6 5 4 30 30 H 1.08995 * 109.47274 * 175.00179 * 9 7 2 31 31 H 1.09002 * 109.46559 * 54.99644 * 9 7 2 32 32 H 1.09007 * 109.46810 * 59.99780 * 11 10 9 33 33 H 1.09003 * 109.46936 * 300.00543 * 11 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0802 5 7 4.0501 0.5660 -1.0599 6 6 3.5235 -0.8059 -1.0599 7 6 1.9957 -0.7632 -1.1401 8 1 1.6934 -0.2821 -2.0705 9 6 1.4422 -2.1889 -1.0994 10 8 1.9350 -2.8580 0.0631 11 6 1.4749 -4.2043 0.1977 12 6 2.0526 -4.8096 1.4510 13 1 2.7054 -4.2248 2.0820 14 6 1.7477 -6.1103 1.7922 15 7 0.9523 -6.8225 1.0242 16 14 2.4644 -6.8609 3.3454 17 1 3.7615 -7.5106 3.0283 18 1 2.6789 -5.7950 4.3569 19 1 1.5225 -7.8738 3.8858 20 1 -0.3632 -1.0254 0.0681 21 1 -0.3632 0.5717 0.8540 22 1 -0.3633 0.4538 -0.9221 23 1 1.6937 1.8775 -0.9174 24 1 1.6013 1.9128 0.8603 25 1 3.9177 2.3450 0.0512 26 1 3.8254 0.8480 1.0106 27 1 3.8464 1.0315 -1.9316 28 1 3.8254 -1.3114 -0.1427 29 1 3.9178 -1.3468 -1.9202 30 1 1.7610 -2.7281 -1.9914 31 1 0.3533 -2.1551 -1.0649 32 1 1.7940 -4.7855 -0.6675 33 1 0.3866 -4.2119 0.2591 34 1 0.7382 -7.7376 1.2641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:42 Heat of formation + Delta-G solvation = -63.076783 kcal Electronic energy + Delta-G solvation = -14913.051875 eV Core-core repulsion = 12458.859162 eV Total energy + Delta-G solvation = -2454.192713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57245 -38.16787 -35.35440 -34.89361 -32.72428 -29.54966 -28.48529 -26.91498 -24.49485 -24.41520 -22.96086 -21.05635 -18.63405 -17.47923 -17.30235 -16.93180 -16.42577 -15.85427 -15.71645 -15.51583 -15.25302 -14.64703 -14.12067 -13.60686 -13.45250 -13.03149 -13.01170 -12.85447 -12.61761 -12.57617 -12.28155 -12.14481 -12.10286 -11.56424 -11.24935 -10.86604 -10.20098 -9.49902 -9.13550 -8.31967 -6.43586 1.39509 1.42392 1.54576 2.34966 2.82870 3.01858 3.18900 3.32107 3.87360 3.95927 4.06329 4.21966 4.31017 4.39988 4.50184 4.52228 4.61420 4.66442 4.68352 4.79410 4.85375 4.99977 5.11283 5.18342 5.26313 5.55603 5.90161 5.97231 6.05253 6.15443 6.51986 6.56202 6.85139 7.28491 8.80474 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041878 B = 0.006862 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.447432 B = 4079.748949 C = 4228.609354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.552 5.552 3 C 0.022 3.978 4 C 0.060 3.940 5 N -0.686 5.686 6 C 0.074 3.926 7 C 0.064 3.936 8 H 0.066 0.934 9 C 0.061 3.939 10 O -0.387 6.387 11 C 0.210 3.790 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.982 3.018 17 H -0.267 1.267 18 H -0.266 1.266 19 H -0.273 1.273 20 H 0.050 0.950 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.347 0.653 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.040 0.960 32 H -0.016 1.016 33 H -0.019 1.019 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 15.767 -4.666 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.107 4.107 4 C -0.070 4.070 5 N -0.314 5.314 6 C -0.056 4.056 7 C -0.046 4.046 8 H 0.084 0.916 9 C -0.017 4.017 10 O -0.307 6.307 11 C 0.135 3.865 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.804 3.196 17 H -0.192 1.192 18 H -0.190 1.190 19 H -0.198 1.198 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.002 0.998 33 H -0.002 1.002 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.205 15.301 -3.804 15.920 hybrid contribution -1.523 -0.433 -0.644 1.709 sum 0.682 14.868 -4.448 15.534 Atomic orbital electron populations 1.22368 0.86927 1.01700 1.01078 1.61943 1.08403 1.14201 1.43227 1.22909 0.97716 0.88346 1.01778 1.22150 0.91161 0.99270 0.94437 1.60722 1.61287 1.02666 1.06754 1.21890 0.90076 0.90869 1.02780 1.22374 0.97932 0.92081 0.92216 0.91625 1.22570 0.97363 0.92881 0.88919 1.87911 1.71989 1.27029 1.43743 1.19777 0.92463 0.78619 0.95616 1.21362 1.30218 0.98208 1.08392 0.92271 1.25944 0.95215 0.96830 1.01194 1.70070 1.36697 1.10361 1.39965 0.85208 0.78378 0.78005 0.77978 1.19198 1.19039 1.19824 0.93086 0.90371 0.94506 0.93844 0.89298 0.87553 0.92110 0.83457 0.92210 0.89804 0.93432 0.94191 0.99787 1.00155 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.14 127.69 1.17 1.91 16 2 N -0.55 -16.69 4.73 -896.51 -4.24 -20.93 16 3 C 0.02 0.48 5.62 86.31 0.48 0.97 16 4 C 0.06 1.34 6.72 86.31 0.58 1.92 16 5 N -0.69 -16.64 6.91 -513.43 -3.55 -20.19 16 6 C 0.07 2.26 5.83 86.31 0.50 2.76 16 7 C 0.06 1.95 2.35 44.92 0.11 2.05 16 8 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 9 C 0.06 2.32 5.28 71.98 0.38 2.70 16 10 O -0.39 -19.37 9.36 -148.98 -1.39 -20.77 16 11 C 0.21 12.12 5.69 71.23 0.41 12.52 16 12 C -0.54 -33.28 9.43 25.60 0.24 -33.04 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 16 Si 0.98 45.37 29.54 68.60 2.03 47.39 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H 0.05 1.67 6.14 -2.39 -0.01 1.65 16 21 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 22 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 25 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.35 6.64 8.89 -89.69 -0.80 5.85 16 28 H 0.06 2.33 7.51 -2.39 -0.02 2.31 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.51 6.08 -2.39 -0.01 1.50 16 32 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -68.21 274.94 -2.28 -70.48 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.27 Total: 8.00 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.33 Total: -7.36 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -7.51 Total: -97.74 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.39 Total: -20.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.21 -2.28 -70.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.404 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds