Wall clock time and date at job start Mon Mar 30 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99724 * 2 1 4 4 C 1.46901 * 111.00022 * 123.95090 * 2 1 3 5 5 C 1.52999 * 109.46667 * 163.91777 * 4 2 1 6 6 H 1.09000 * 109.67967 * 54.68919 * 5 4 2 7 7 C 1.53293 * 109.71559 * 294.15302 * 5 4 2 8 8 O 1.42965 * 109.22174 * 187.95880 * 7 5 4 9 9 C 1.42960 * 114.17133 * 62.58277 * 8 7 5 10 10 C 1.53303 * 109.21748 * 297.41944 * 9 8 7 11 11 N 1.47148 * 108.38498 * 52.30008 * 10 9 8 12 12 C 1.36932 * 120.98227 * 129.44460 * 11 10 9 13 13 H 1.08003 * 120.00292 * 209.97635 * 12 11 10 14 14 C 1.38814 * 119.99958 * 29.97609 * 12 11 10 15 15 N 1.31615 * 120.00303 * 11.86872 * 14 12 11 16 16 Si 1.86805 * 120.00112 * 191.87315 * 14 12 11 17 17 H 1.48503 * 109.46745 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47279 * 119.99486 * 16 14 12 19 19 H 1.48500 * 109.47134 * 239.99985 * 16 14 12 20 20 H 1.09001 * 109.47079 * 296.04098 * 1 2 3 21 21 H 1.09002 * 109.47247 * 56.04661 * 1 2 3 22 22 H 1.09007 * 109.46909 * 176.04711 * 1 2 3 23 23 H 1.08994 * 109.47080 * 183.22504 * 3 2 1 24 24 H 1.09005 * 109.47148 * 303.22840 * 3 2 1 25 25 H 1.08997 * 109.47189 * 63.22329 * 3 2 1 26 26 H 1.09001 * 109.46891 * 43.92301 * 4 2 1 27 27 H 1.08999 * 109.47143 * 283.91764 * 4 2 1 28 28 H 1.09001 * 109.51152 * 68.03469 * 7 5 4 29 29 H 1.09000 * 109.51189 * 307.87953 * 7 5 4 30 30 H 1.09000 * 109.51175 * 57.33722 * 9 8 7 31 31 H 1.08994 * 109.51380 * 177.49408 * 9 8 7 32 32 H 1.08992 * 109.67905 * 172.02548 * 10 9 8 33 33 H 1.08999 * 109.68031 * 292.53693 * 10 9 8 34 34 H 0.96994 * 120.00187 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4722 -1.0858 0.8973 6 1 4.0200 -0.1644 0.6999 7 6 3.6078 -2.0336 -0.2999 8 8 4.9647 -2.4722 -0.4016 9 6 5.4229 -3.2240 0.7248 10 6 5.3802 -2.3371 1.9745 11 7 4.0343 -1.7522 2.0828 12 6 3.3255 -1.8263 3.2521 13 1 2.2462 -1.8586 3.2283 14 6 3.9942 -1.8599 4.4680 15 7 5.2809 -1.5877 4.5193 16 14 3.0680 -2.2916 6.0318 17 1 1.6427 -2.5530 5.7066 18 1 3.6673 -3.5049 6.6432 19 1 3.1573 -1.1594 6.9886 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 3.0835 1.3430 -0.0578 24 1 1.5999 1.9125 -0.8597 25 1 1.6934 1.8766 0.9174 26 1 1.4346 -1.6949 1.2409 27 1 1.8949 -0.1774 2.0496 28 1 3.3252 -1.5096 -1.2129 29 1 2.9563 -2.8957 -0.1574 30 1 4.7778 -4.0904 0.8710 31 1 6.4459 -3.5563 0.5489 32 1 5.5914 -2.9384 2.8587 33 1 6.1205 -1.5420 1.8859 34 1 5.7482 -1.6115 5.3689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:24 Heat of formation + Delta-G solvation = -33.174818 kcal Electronic energy + Delta-G solvation = -15458.311586 eV Core-core repulsion = 13005.415519 eV Total energy + Delta-G solvation = -2452.896067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26667 -38.14756 -36.26773 -33.49781 -32.15503 -28.94206 -28.42293 -27.59449 -25.21101 -24.23801 -22.15247 -21.19637 -18.50815 -17.51312 -17.09184 -16.35727 -16.15969 -15.95851 -15.83848 -15.16547 -14.90225 -14.69896 -14.43852 -13.44624 -13.21582 -13.08885 -12.92583 -12.61395 -12.57296 -12.51250 -12.22007 -12.07339 -11.78019 -11.71396 -11.25561 -10.69215 -10.55453 -9.27930 -8.66496 -7.88756 -5.40265 1.43499 1.45174 1.55085 2.44995 2.93886 3.08318 3.26499 3.69465 4.00373 4.26221 4.32345 4.37764 4.44812 4.50077 4.56040 4.68112 4.69833 4.79617 4.81342 4.99209 5.02071 5.04024 5.10098 5.11769 5.31881 5.56971 5.60879 6.03551 6.16169 6.32212 6.39239 7.08439 7.76544 8.32692 9.17177 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.012514 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.054302 B = 2236.986391 C = 3068.354964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.025 3.975 4 C 0.082 3.918 5 C 0.144 3.856 6 H 0.015 0.985 7 C 0.071 3.929 8 O -0.405 6.405 9 C 0.048 3.952 10 C 0.149 3.851 11 N -0.611 5.611 12 C -0.256 4.256 13 H 0.074 0.926 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.289 1.289 19 H -0.294 1.294 20 H 0.020 0.980 21 H 0.089 0.911 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.067 0.933 33 H -0.002 1.002 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 0.862 -8.336 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.123 4.123 4 C -0.046 4.046 5 C 0.038 3.962 6 H 0.032 0.968 7 C -0.006 4.006 8 O -0.324 6.324 9 C -0.030 4.030 10 C 0.023 3.977 11 N -0.337 5.337 12 C -0.386 4.386 13 H 0.091 0.909 14 C -0.245 4.245 15 N -0.583 5.583 16 Si 0.795 3.205 17 H -0.189 1.189 18 H -0.215 1.215 19 H -0.221 1.221 20 H 0.039 0.961 21 H 0.107 0.893 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.016 0.984 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.745 0.681 -8.792 11.103 hybrid contribution -0.349 0.346 2.269 2.321 sum -7.094 1.027 -6.524 9.692 Atomic orbital electron populations 1.22437 0.85891 1.02838 1.00967 1.61967 1.09079 1.14137 1.42368 1.22426 1.00522 0.88506 1.00832 1.21887 0.94409 0.97502 0.90848 1.21157 0.93276 0.93748 0.88066 0.96756 1.22914 0.82095 0.96690 0.98949 1.87774 1.29633 1.73207 1.41788 1.23194 0.99899 0.93328 0.86551 1.21247 0.85727 0.94565 0.96163 1.44394 1.16297 1.64048 1.08918 1.19478 0.91055 1.44151 0.83908 0.90884 1.25909 0.96991 1.00886 1.00732 1.70158 1.09745 1.53300 1.25127 0.85215 0.78657 0.77004 0.79657 1.18874 1.21523 1.22100 0.96148 0.89266 0.91006 0.92636 0.88963 0.96418 0.91198 0.95907 0.87180 0.93856 0.93582 0.87637 0.91423 0.98361 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.54 127.69 1.22 1.84 16 2 N -0.55 -16.61 4.64 -948.82 -4.40 -21.00 16 3 C 0.03 0.71 9.39 127.69 1.20 1.91 16 4 C 0.08 3.11 3.16 86.30 0.27 3.38 16 5 C 0.14 6.23 3.16 44.96 0.14 6.37 16 6 H 0.01 0.69 6.59 -2.39 -0.02 0.68 16 7 C 0.07 2.72 6.09 72.08 0.44 3.16 16 8 O -0.41 -16.69 10.74 -148.98 -1.60 -18.29 16 9 C 0.05 1.96 6.99 72.08 0.50 2.46 16 10 C 0.15 7.48 5.39 86.36 0.47 7.94 16 11 N -0.61 -31.37 3.04 -673.74 -2.05 -33.42 16 12 C -0.26 -13.89 8.60 84.03 0.72 -13.16 16 13 H 0.07 3.81 6.33 -2.91 -0.02 3.80 16 14 C -0.05 -2.77 5.04 84.86 0.43 -2.34 16 15 N -0.94 -55.50 11.11 21.65 0.24 -55.26 16 16 Si 0.97 44.50 29.57 68.60 2.03 46.53 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 21 H 0.09 1.66 8.13 -2.39 -0.02 1.64 16 22 H 0.07 1.61 8.09 -2.38 -0.02 1.59 16 23 H 0.05 1.73 6.60 -2.39 -0.02 1.71 16 24 H 0.09 2.00 8.13 -2.38 -0.02 1.98 16 25 H 0.02 0.51 8.12 -2.39 -0.02 0.49 16 26 H 0.07 2.65 7.66 -2.39 -0.02 2.63 16 27 H 0.02 0.98 7.14 -2.39 -0.02 0.96 16 28 H 0.11 3.72 8.02 -2.39 -0.02 3.70 16 29 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.07 3.71 6.27 -2.39 -0.01 3.69 16 33 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -62.91 267.84 0.67 -62.24 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.06 Total: 7.64 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.39 Total: 11.56 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -6.20 Total: -109.68 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.60 Total: -18.29 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.91 0.67 -62.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.064 kcal (2) G-P(sol) polarization free energy of solvation -62.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds