Wall clock time and date at job start Mon Mar 30 2020 03:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99603 * 2 1 4 4 H 1.48505 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47312 * 299.99869 * 3 2 1 6 6 H 1.48499 * 109.47105 * 60.00063 * 3 2 1 7 7 C 1.37876 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47083 * 300.00485 * 9 7 2 11 11 C 1.53000 * 109.46801 * 60.00200 * 9 7 2 12 12 N 1.46901 * 109.46769 * 184.99750 * 11 9 7 13 13 C 1.50697 * 109.47085 * 180.02562 * 9 7 2 14 14 C 1.34483 * 126.57618 * 300.02860 * 13 9 7 15 15 O 1.34378 * 108.44494 * 179.97438 * 14 13 9 16 16 C 1.34298 * 109.47510 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 125.80344 * 180.02562 * 16 15 14 18 18 C 1.34661 * 108.40086 * 359.72789 * 16 15 14 19 19 H 0.96999 * 120.00539 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47398 * 305.00045 * 11 9 7 21 21 H 1.09001 * 109.47194 * 65.00225 * 11 9 7 22 22 H 1.00898 * 110.99877 * 56.04956 * 12 11 9 23 23 H 1.00908 * 110.99847 * 180.02562 * 12 11 9 24 24 H 1.08005 * 125.77984 * 0.02562 * 14 13 9 25 25 H 1.07995 * 126.58530 * 180.26834 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5799 -1.2495 12 7 -0.4521 -3.7952 -1.1906 13 6 2.2305 -3.6445 -0.0005 14 6 3.1621 -3.9024 -0.9356 15 8 3.8333 -5.0086 -0.5732 16 6 3.3437 -5.4687 0.5896 17 17 3.9014 -6.8751 1.4409 18 6 2.3511 -4.6499 0.9866 19 1 -0.4851 0.8400 0.0004 20 1 -0.2764 -1.7042 -1.2950 21 1 1.0025 -2.6115 -2.1375 22 1 -0.9994 -3.8205 -0.3434 23 1 -1.0425 -3.8718 -2.0054 24 1 3.3410 -3.3186 -1.8265 25 1 1.7587 -4.7447 1.8846 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241131.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:56 Heat of formation + Delta-G solvation = 4.626965 kcal Electronic energy + Delta-G solvation = -12265.950222 eV Core-core repulsion = 9886.017677 eV Total energy + Delta-G solvation = -2379.932545 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.84355 -36.56201 -35.59654 -32.26750 -32.07056 -29.23341 -27.13844 -23.94333 -21.76241 -20.92721 -19.15722 -16.93517 -16.42853 -15.48185 -14.74562 -14.60174 -14.23822 -13.36423 -13.10592 -12.41706 -12.11094 -11.78292 -11.76369 -11.35490 -11.04135 -10.96555 -10.65551 -10.03756 -9.82214 -9.42877 -8.69385 -8.52154 -7.68948 -7.51721 -6.11504 -4.19177 1.73316 2.27781 3.23171 3.31878 3.35531 3.50140 4.26524 4.36861 5.17020 5.65729 5.74739 5.89582 6.26725 6.60409 6.64012 6.75099 6.94563 7.27613 7.45012 7.61833 7.83624 7.91925 8.05811 8.33803 8.40455 8.85936 9.46295 10.92562 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.039097 B = 0.008579 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.987424 B = 3263.130573 C = 3658.029584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.109 3.891 10 H 0.035 0.965 11 C 0.064 3.936 12 N -0.857 5.857 13 C -0.098 4.098 14 C -0.045 4.045 15 O -0.184 6.184 16 C -0.002 4.002 17 Cl -0.006 7.006 18 C -0.162 4.162 19 H 0.261 0.739 20 H 0.068 0.932 21 H 0.041 0.959 22 H 0.329 0.671 23 H 0.319 0.681 24 H 0.203 0.797 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -7.531 -0.081 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.090 3.910 10 H 0.053 0.947 11 C -0.065 4.065 12 N -0.384 5.384 13 C -0.100 4.100 14 C -0.111 4.111 15 O -0.083 6.083 16 C -0.078 4.078 17 Cl 0.023 6.977 18 C -0.182 4.182 19 H 0.071 0.929 20 H 0.086 0.914 21 H 0.060 0.940 22 H 0.140 0.860 23 H 0.129 0.871 24 H 0.220 0.780 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.676 -8.038 -0.168 8.841 hybrid contribution -0.426 1.496 0.162 1.564 sum 3.250 -6.542 -0.006 7.305 Atomic orbital electron populations 1.69869 1.05945 1.26619 1.50552 1.24982 0.94896 0.99255 0.94793 0.86484 0.80230 0.83414 0.77627 1.19624 1.20989 1.20952 1.21198 0.93159 0.89668 1.50818 0.92137 1.17330 0.90573 0.88420 0.94700 0.94720 1.22031 0.96166 0.90111 0.98232 1.59007 1.29693 1.43741 1.05963 1.20855 0.98744 0.97629 0.92763 1.23732 0.96441 0.88242 1.02648 1.83855 1.53162 1.37924 1.33344 1.22099 1.00461 0.95045 0.90153 1.98357 1.90251 1.37237 1.71872 1.21466 0.98984 0.95614 1.02153 0.92897 0.91433 0.93995 0.85969 0.87144 0.78030 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 11.29 55.43 0.63 -23.46 15 2 C 0.06 1.63 5.29 -17.82 -0.09 1.54 15 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.51 -13.31 8.41 -34.44 -0.29 -13.60 15 8 H 0.06 1.59 7.72 -52.49 -0.40 1.18 15 9 C 0.11 2.61 2.30 -92.92 -0.21 2.39 15 10 H 0.03 0.91 8.13 -51.93 -0.42 0.48 15 11 C 0.06 1.45 5.95 -3.82 -0.02 1.43 15 12 N -0.86 -16.54 9.34 -10.37 -0.10 -16.64 15 13 C -0.10 -2.13 4.57 -104.74 -0.48 -2.61 15 14 C -0.04 -0.89 11.43 29.41 0.34 -0.56 15 15 O -0.18 -3.58 10.65 5.52 0.06 -3.52 15 16 C 0.00 -0.04 7.93 29.47 0.23 0.20 15 17 Cl -0.01 -0.08 29.30 -51.86 -1.52 -1.60 15 18 C -0.16 -3.19 10.83 -39.64 -0.43 -3.62 15 19 H 0.26 6.76 8.31 -40.82 -0.34 6.43 15 20 H 0.07 1.69 5.95 -51.93 -0.31 1.38 15 21 H 0.04 0.93 7.89 -51.93 -0.41 0.53 15 22 H 0.33 6.21 8.99 -39.29 -0.35 5.86 15 23 H 0.32 5.41 9.08 -39.29 -0.36 5.05 15 24 H 0.20 3.62 8.06 -52.48 -0.42 3.20 15 25 H 0.15 2.64 8.06 -52.49 -0.42 2.22 15 LS Contribution 240.34 15.07 3.62 3.62 Total: -1.00 -27.07 240.34 -5.52 -32.59 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.24 Total: 8.37 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.96 Total: -14.83 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.53 Total: -40.10 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.06 Total: -3.52 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.07 -5.52 -32.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241131.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.218 kcal (2) G-P(sol) polarization free energy of solvation -27.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds