Wall clock time and date at job start Mon Mar 30 2020 03:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48502 * 109.46796 * 269.99474 * 3 2 1 5 5 H 1.48494 * 109.47493 * 29.99381 * 3 2 1 6 6 H 1.48497 * 109.47340 * 149.99851 * 3 2 1 7 7 C 1.37877 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00071 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47076 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47441 * 305.00289 * 10 9 7 12 12 N 1.46898 * 109.46735 * 65.00469 * 10 9 7 13 13 C 1.50700 * 109.46859 * 185.00436 * 10 9 7 14 14 C 1.34494 * 126.57210 * 280.04153 * 13 10 9 15 15 O 1.34368 * 108.44363 * 179.97438 * 14 13 10 16 16 C 1.34307 * 109.47640 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 125.79929 * 180.26309 * 16 15 14 18 18 C 1.34655 * 108.39642 * 0.02562 * 16 15 14 19 19 H 0.97002 * 120.00621 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.46828 * 60.00711 * 9 7 2 21 21 H 1.08994 * 109.47537 * 300.00437 * 9 7 2 22 22 H 1.00897 * 111.00205 * 296.04074 * 12 10 9 23 23 H 1.00899 * 111.00279 * 60.00160 * 12 10 9 24 24 H 1.08001 * 125.77841 * 359.97438 * 14 13 10 25 25 H 1.08001 * 126.58077 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 1 3.5873 -3.1753 0.8421 12 7 3.6326 -3.2934 -1.2549 13 6 5.5236 -2.6381 0.1234 14 6 6.4091 -2.4200 -0.8651 15 8 7.6481 -2.5056 -0.3524 16 6 7.5717 -2.7769 0.9607 17 17 8.9193 -2.9702 2.0378 18 6 6.2720 -2.8682 1.3008 19 1 -0.4851 0.8400 -0.0004 20 1 3.8752 -0.6796 0.8896 21 1 3.8746 -0.6807 -0.8904 22 1 2.6289 -3.3626 -1.3308 23 1 4.0232 -2.8122 -2.0512 24 1 6.1654 -2.2114 -1.8964 25 1 5.8771 -3.0773 2.2841 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243876.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:50 Heat of formation + Delta-G solvation = 3.431332 kcal Electronic energy + Delta-G solvation = -12039.352509 eV Core-core repulsion = 9659.368117 eV Total energy + Delta-G solvation = -2379.984391 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.42888 -36.94433 -36.18107 -32.78617 -31.86930 -28.82302 -28.63194 -24.65035 -21.52152 -21.48986 -19.45556 -17.71596 -16.68005 -16.07673 -15.09349 -14.91242 -14.31740 -13.61807 -13.14617 -13.02323 -12.49521 -12.20465 -12.13421 -11.93488 -11.34578 -11.01169 -10.63937 -10.38286 -9.92092 -9.44590 -9.30891 -8.65741 -8.29694 -7.87092 -6.15908 -4.16002 1.30938 1.74675 2.78054 3.22724 3.31805 3.36004 3.71803 4.35518 5.07078 5.14842 5.24202 5.36844 5.76002 5.88874 6.08256 6.29283 6.44226 6.64541 7.00622 7.09812 7.19084 7.63353 7.86510 8.13511 8.38102 8.86427 9.46200 10.96652 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.043683 B = 0.007397 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.829905 B = 3784.588863 C = 4065.551781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.164 3.836 11 H 0.084 0.916 12 N -0.839 5.839 13 C -0.140 4.140 14 C -0.025 4.025 15 O -0.176 6.176 16 C 0.009 3.991 17 Cl 0.010 6.990 18 C -0.161 4.161 19 H 0.264 0.736 20 H 0.021 0.979 21 H 0.011 0.989 22 H 0.354 0.646 23 H 0.326 0.674 24 H 0.208 0.792 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.121 -4.267 0.684 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.077 4.077 10 C 0.053 3.947 11 H 0.102 0.898 12 N -0.368 5.368 13 C -0.142 4.142 14 C -0.093 4.093 15 O -0.074 6.074 16 C -0.067 4.067 17 Cl 0.039 6.961 18 C -0.182 4.182 19 H 0.074 0.926 20 H 0.039 0.961 21 H 0.030 0.970 22 H 0.169 0.831 23 H 0.137 0.863 24 H 0.224 0.776 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.724 -4.777 0.922 15.507 hybrid contribution -0.089 1.928 -0.017 1.930 sum 14.635 -2.849 0.905 14.937 Atomic orbital electron populations 1.69901 1.06280 1.27077 1.50364 1.24994 0.94685 0.99171 0.94260 0.86800 0.80443 0.83664 0.78529 1.20319 1.21279 1.19018 1.21040 0.89003 0.94581 1.51844 0.90711 1.20315 0.97567 0.92831 0.96945 1.19743 0.85831 0.95618 0.93553 0.89752 1.59181 1.17804 1.56459 1.03312 1.20673 0.97871 1.03606 0.92085 1.23776 0.78995 1.06742 0.99762 1.83923 1.32306 1.70426 1.20724 1.22215 0.89592 1.12176 0.82729 1.98395 1.45157 1.96029 1.56524 1.21434 0.89791 1.06099 1.00838 0.92586 0.96059 0.97040 0.83128 0.86320 0.77571 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 15 7 C -0.53 -14.09 9.10 -34.44 -0.31 -14.41 15 8 H 0.07 2.12 7.39 -52.49 -0.39 1.74 15 9 C -0.04 -0.85 3.67 -27.88 -0.10 -0.95 15 10 C 0.16 3.14 3.23 -68.87 -0.22 2.91 15 11 H 0.08 1.69 8.14 -51.93 -0.42 1.26 15 12 N -0.84 -14.71 9.10 -5.66 -0.05 -14.76 15 13 C -0.14 -2.40 5.17 -104.74 -0.54 -2.95 15 14 C -0.03 -0.39 11.47 29.41 0.34 -0.05 15 15 O -0.18 -2.74 10.65 5.52 0.06 -2.68 15 16 C 0.01 0.13 7.93 29.46 0.23 0.36 15 17 Cl 0.01 0.13 29.30 -51.86 -1.52 -1.39 15 18 C -0.16 -2.55 10.84 -39.65 -0.43 -2.98 15 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.02 0.50 7.20 -51.93 -0.37 0.13 15 21 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 15 22 H 0.35 6.60 7.90 -39.29 -0.31 6.29 15 23 H 0.33 5.18 8.18 -39.29 -0.32 4.86 15 24 H 0.21 2.55 7.61 -52.49 -0.40 2.15 15 25 H 0.16 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 238.48 15.07 3.59 3.59 Total: -1.00 -29.15 238.48 -5.15 -34.30 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -2.20 Total: 6.52 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -1.14 Total: -16.16 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.72 Total: -40.76 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.06 Total: -2.68 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.15 -5.15 -34.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243876.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.728 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds