Wall clock time and date at job start Mon Mar 30 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.34498 * 126.57445 * 80.02234 * 13 10 9 15 15 O 1.34371 * 108.44252 * 180.02562 * 14 13 10 16 16 C 1.34309 * 109.47662 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 125.79897 * 180.02562 * 16 15 14 18 18 C 1.34649 * 108.39711 * 359.72363 * 16 15 14 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.00899 * 110.99551 * 176.04512 * 12 10 9 23 23 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 24 24 H 1.07993 * 125.77558 * 0.02562 * 14 13 10 25 25 H 1.08001 * 126.58670 * 180.25585 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8648 -5.6185 -0.8839 15 8 0.3192 -6.7364 -0.3757 16 6 0.5925 -6.8111 0.9372 17 17 0.0919 -8.0827 2.0077 18 6 1.3263 -5.7357 1.2805 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.7159 -4.3676 -1.2664 23 1 2.3960 -3.7427 -2.0622 24 1 0.8067 -5.2994 -1.9140 25 1 1.7091 -5.5047 2.2636 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243879.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:53 Heat of formation + Delta-G solvation = 4.577955 kcal Electronic energy + Delta-G solvation = -11980.204745 eV Core-core repulsion = 9600.270074 eV Total energy + Delta-G solvation = -2379.934670 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.44693 -36.94750 -36.04550 -32.69327 -31.76794 -28.71762 -28.29308 -24.46814 -21.73011 -21.51447 -19.43446 -17.51116 -16.24159 -15.98553 -15.34435 -14.89157 -14.36781 -13.55099 -13.34833 -12.81383 -12.25921 -12.16397 -12.09149 -11.30113 -11.15444 -10.80432 -10.65644 -10.27317 -9.96720 -9.12150 -9.06846 -8.30568 -8.25720 -8.00734 -5.91762 -3.90759 1.30042 1.72012 2.74591 3.38765 3.44526 3.48831 3.70522 4.54371 5.03660 5.23640 5.31825 5.47062 5.70087 5.88998 6.06466 6.33116 6.53141 6.83405 7.08598 7.53153 7.68101 7.95345 8.07938 8.13402 8.51613 9.15525 9.71398 11.20035 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.056727 B = 0.006398 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.470140 B = 4375.146825 C = 4554.272660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.050 3.950 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.159 3.841 11 H 0.080 0.920 12 N -0.820 5.820 13 C -0.182 4.182 14 C -0.034 4.034 15 O -0.175 6.175 16 C 0.010 3.990 17 Cl 0.011 6.989 18 C -0.161 4.161 19 H 0.258 0.742 20 H 0.021 0.979 21 H 0.016 0.984 22 H 0.323 0.677 23 H 0.332 0.668 24 H 0.207 0.793 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -13.638 0.762 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.081 0.919 9 C -0.001 4.001 10 C 0.047 3.953 11 H 0.098 0.902 12 N -0.346 5.346 13 C -0.185 4.185 14 C -0.102 4.102 15 O -0.073 6.073 16 C -0.066 4.066 17 Cl 0.039 6.961 18 C -0.182 4.182 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.034 0.966 22 H 0.134 0.866 23 H 0.145 0.855 24 H 0.223 0.777 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.644 -13.081 0.917 13.215 hybrid contribution -0.126 -0.124 0.032 0.179 sum 1.518 -13.204 0.949 13.325 Atomic orbital electron populations 1.69975 1.06031 1.26386 1.51897 1.25027 0.94807 0.99217 0.95881 0.86569 0.79752 0.83522 0.77951 1.20856 1.21579 1.19956 1.21163 0.93400 0.90053 1.48769 0.91901 1.19141 0.92884 0.90709 0.97349 1.20312 0.94338 0.88379 0.92272 0.90166 1.58854 1.17727 1.54250 1.03791 1.22053 1.03609 1.00690 0.92198 1.23777 1.00477 0.85931 1.00003 1.83919 1.62035 1.40473 1.20861 1.22316 1.05991 0.95464 0.82813 1.98396 1.90940 1.49762 1.56972 1.21512 1.02330 0.93372 1.00953 0.93230 0.96104 0.96601 0.86583 0.85525 0.77675 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 15 2 C 0.05 1.45 5.46 -17.82 -0.10 1.35 15 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.50 -13.81 8.84 -34.44 -0.30 -14.11 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.04 0.91 4.60 -27.88 -0.13 0.78 15 10 C 0.16 3.11 3.17 -68.86 -0.22 2.89 15 11 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 12 N -0.82 -14.36 8.85 -5.65 -0.05 -14.41 15 13 C -0.18 -3.12 5.16 -104.74 -0.54 -3.66 15 14 C -0.03 -0.53 11.47 29.41 0.34 -0.19 15 15 O -0.17 -2.77 10.65 5.51 0.06 -2.71 15 16 C 0.01 0.15 7.93 29.46 0.23 0.39 15 17 Cl 0.01 0.13 29.30 -51.86 -1.52 -1.39 15 18 C -0.16 -2.57 10.84 -39.65 -0.43 -3.00 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.32 4.73 9.06 -39.29 -0.36 4.38 15 23 H 0.33 5.40 8.18 -39.29 -0.32 5.08 15 24 H 0.21 2.59 7.61 -52.49 -0.40 2.19 15 25 H 0.16 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 243.81 15.07 3.67 3.67 Total: -1.00 -30.47 243.81 -5.58 -36.05 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.31 Total: 3.81 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.15 Total: -15.55 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.69 Total: -40.83 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: 0.06 Total: -2.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.47 -5.58 -36.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243879.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.626 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds