Wall clock time and date at job start Mon Mar 30 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.34498 * 126.57445 * 80.02234 * 13 10 9 15 15 O 1.34371 * 108.44252 * 180.02562 * 14 13 10 16 16 C 1.34309 * 109.47662 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 125.79897 * 180.02562 * 16 15 14 18 18 C 1.34649 * 108.39711 * 359.72363 * 16 15 14 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.00899 * 110.99551 * 176.04512 * 12 10 9 23 23 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 24 24 H 1.07993 * 125.77558 * 0.02562 * 14 13 10 25 25 H 1.08001 * 126.58670 * 180.25585 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8648 -5.6185 -0.8839 15 8 0.3192 -6.7364 -0.3757 16 6 0.5925 -6.8111 0.9372 17 17 0.0919 -8.0827 2.0077 18 6 1.3263 -5.7357 1.2805 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.7159 -4.3676 -1.2664 23 1 2.3960 -3.7427 -2.0622 24 1 0.8067 -5.2994 -1.9140 25 1 1.7091 -5.5047 2.2636 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243879.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:53 Heat of formation + Delta-G solvation = -16.339631 kcal Electronic energy + Delta-G solvation = -11981.111799 eV Core-core repulsion = 9600.270074 eV Total energy + Delta-G solvation = -2380.841725 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.68874 -38.04224 -37.60250 -34.69084 -33.18058 -30.20893 -29.97076 -26.31490 -23.45223 -22.75144 -20.83950 -18.93790 -18.15596 -17.32691 -16.85035 -16.34677 -16.14657 -15.06846 -14.76602 -14.19443 -14.00751 -13.73154 -13.21320 -13.12428 -12.71521 -12.54222 -12.39916 -12.05658 -11.77627 -11.19878 -10.59182 -10.48646 -9.59817 -9.34852 -8.10315 -6.16345 0.16132 0.50708 1.43617 1.45626 1.46461 1.57050 2.47540 2.52198 3.23396 3.73827 3.95330 4.06234 4.32850 4.55453 4.80481 4.89067 4.97332 5.31282 5.49947 5.68838 5.83734 5.89931 6.31474 6.52138 6.85123 6.98336 7.50477 9.01580 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.056727 B = 0.006398 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.470140 B = 4375.146825 C = 4554.272660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.043 3.957 10 C 0.177 3.823 11 H 0.073 0.927 12 N -0.827 5.827 13 C -0.206 4.206 14 C -0.022 4.022 15 O -0.177 6.177 16 C 0.006 3.994 17 Cl 0.036 6.964 18 C -0.172 4.172 19 H 0.259 0.741 20 H -0.011 1.011 21 H -0.005 1.005 22 H 0.343 0.657 23 H 0.340 0.660 24 H 0.232 0.768 25 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 -14.125 0.493 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.065 3.935 11 H 0.091 0.909 12 N -0.356 5.356 13 C -0.209 4.209 14 C -0.089 4.089 15 O -0.075 6.075 16 C -0.069 4.069 17 Cl 0.064 6.936 18 C -0.193 4.193 19 H 0.068 0.932 20 H 0.008 0.992 21 H 0.014 0.986 22 H 0.156 0.844 23 H 0.153 0.847 24 H 0.248 0.752 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.477 -13.594 0.647 13.833 hybrid contribution -0.404 -0.044 0.131 0.427 sum 2.073 -13.638 0.779 13.817 Atomic orbital electron populations 1.70104 1.07640 1.27281 1.53117 1.25896 0.95637 1.03012 0.95645 0.85508 0.78626 0.79035 0.78182 1.20171 1.21345 1.18976 1.21524 0.93547 0.91403 1.47992 0.91953 1.18964 0.93292 0.92389 0.94775 1.19746 0.93125 0.87600 0.93068 0.90921 1.58711 1.18178 1.55523 1.03153 1.21801 1.05180 1.00386 0.93581 1.24230 0.98763 0.85175 1.00734 1.83943 1.61902 1.40460 1.21198 1.22509 1.05551 0.96018 0.82854 1.98405 1.90647 1.48499 1.56033 1.21676 1.02743 0.93629 1.01208 0.93211 0.99231 0.98638 0.84382 0.84654 0.75169 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.29 21.45 0.28 -56.99 15 2 C -0.01 -0.33 5.46 84.66 0.46 0.14 15 3 Si 0.96 44.93 29.54 68.60 2.03 46.95 15 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 7 C -0.51 -28.34 8.84 25.60 0.23 -28.11 15 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 15 9 C 0.04 2.20 4.60 29.85 0.14 2.34 15 10 C 0.18 6.86 3.17 44.16 0.14 7.00 15 11 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 12 N -0.83 -27.86 8.85 -171.80 -1.52 -29.38 15 13 C -0.21 -6.88 5.16 -19.94 -0.10 -6.98 15 14 C -0.02 -0.63 11.47 66.96 0.77 0.14 15 15 O -0.18 -5.29 10.65 -3.20 -0.03 -5.33 15 16 C 0.01 0.19 7.93 67.00 0.53 0.72 15 17 Cl 0.04 0.83 29.30 -2.72 -0.08 0.75 15 18 C -0.17 -5.33 10.84 22.23 0.24 -5.09 15 19 H 0.26 14.98 8.31 -92.70 -0.77 14.21 15 20 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 15 21 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 22 H 0.34 9.38 9.06 -89.69 -0.81 8.56 15 23 H 0.34 10.55 8.18 -89.69 -0.73 9.82 15 24 H 0.23 5.31 7.61 -2.91 -0.02 5.28 15 25 H 0.17 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -64.30 243.81 2.76 -61.54 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.32 Total: 12.30 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 2.40 Total: -29.85 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.24 Total: -86.37 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.03 Total: -5.33 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -64.30 2.76 -61.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243879.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.205 kcal (2) G-P(sol) polarization free energy of solvation -64.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds