Wall clock time and date at job start Mon Mar 30 2020 03:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34373 * 125.77714 * 2 1 4 4 C 1.34303 * 109.47841 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 125.80269 * 180.02562 * 4 3 2 6 6 C 1.34657 * 108.39785 * 359.72377 * 4 3 2 7 7 C 1.34493 * 125.78122 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.57052 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.47275 * 325.00123 * 8 7 2 10 10 N 1.46898 * 109.46797 * 204.99638 * 8 7 2 11 11 C 1.50700 * 109.47148 * 84.99899 * 8 7 2 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 H 1.09006 * 109.47210 * 269.97227 * 1 2 3 20 20 H 1.09002 * 109.47149 * 29.97427 * 1 2 3 21 21 H 1.08998 * 109.47288 * 149.97297 * 1 2 3 22 22 H 1.07995 * 126.59115 * 180.25902 * 6 4 3 23 23 H 1.00892 * 111.00332 * 300.00256 * 10 8 7 24 24 H 1.00905 * 110.99665 * 63.96030 * 10 8 7 25 25 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2926 1.0902 0.0000 4 6 3.5816 0.7132 -0.0006 5 17 4.9515 1.7796 -0.0002 6 6 3.6310 -0.6324 0.0052 7 6 2.2933 -1.0911 -0.0005 8 6 1.8365 -2.5272 -0.0006 9 1 0.9244 -2.6183 0.5891 10 7 2.8844 -3.3744 0.5841 11 6 1.5656 -2.9681 -1.4160 12 1 1.7103 -2.2775 -2.2337 13 6 1.1342 -4.2532 -1.6671 14 7 0.9584 -5.0943 -0.6714 15 14 0.7991 -4.8000 -3.4216 16 1 0.3500 -6.2154 -3.4218 17 1 -0.2604 -3.9439 -4.0130 18 1 2.0420 -4.6755 -4.2247 19 1 -0.3634 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 4.5211 -1.2439 0.0103 23 1 3.7408 -3.3073 0.0549 24 1 3.0391 -3.1410 1.5535 25 1 1.1328 -4.8105 0.2397 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251704.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:34 Heat of formation + Delta-G solvation = -17.210255 kcal Electronic energy + Delta-G solvation = -12354.154788 eV Core-core repulsion = 9973.275310 eV Total energy + Delta-G solvation = -2380.879478 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.67330 -38.06873 -37.37091 -34.16952 -32.76299 -32.31400 -28.11282 -26.91774 -24.38662 -22.22076 -21.00536 -19.00091 -18.24330 -17.42940 -16.49610 -15.84184 -15.55182 -15.23749 -14.52995 -14.22061 -14.00983 -13.63299 -13.52779 -13.07092 -12.88517 -12.57761 -12.49070 -12.11412 -11.88311 -11.20645 -10.48608 -10.32958 -9.40140 -9.18334 -8.34460 -6.21040 0.10803 0.49806 1.50910 1.60547 1.65713 1.85041 2.43667 2.67044 3.34232 3.86308 3.93594 4.22065 4.43758 4.51184 4.65019 4.73103 4.81159 5.12050 5.26014 5.42840 5.90730 5.99803 6.25623 6.70252 6.80511 7.06566 7.69182 9.01924 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.039537 B = 0.008577 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.030432 B = 3263.928212 C = 3365.001424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.016 4.016 3 O -0.180 6.180 4 C 0.004 3.996 5 Cl 0.038 6.962 6 C -0.172 4.172 7 C -0.186 4.186 8 C 0.274 3.726 9 H 0.018 0.982 10 N -0.834 5.834 11 C -0.612 4.612 12 H 0.032 0.968 13 C -0.007 4.007 14 N -0.918 5.918 15 Si 1.107 2.893 16 H -0.286 1.286 17 H -0.273 1.273 18 H -0.280 1.280 19 H 0.095 0.905 20 H 0.093 0.907 21 H 0.083 0.917 22 H 0.159 0.841 23 H 0.330 0.670 24 H 0.318 0.682 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 11.471 1.588 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 O -0.080 6.080 4 C -0.072 4.072 5 Cl 0.067 6.933 6 C -0.193 4.193 7 C -0.189 4.189 8 C 0.165 3.835 9 H 0.035 0.965 10 N -0.362 5.362 11 C -0.651 4.651 12 H 0.050 0.950 13 C -0.211 4.211 14 N -0.553 5.553 15 Si 0.931 3.069 16 H -0.212 1.212 17 H -0.199 1.199 18 H -0.206 1.206 19 H 0.113 0.887 20 H 0.112 0.888 21 H 0.102 0.898 22 H 0.177 0.823 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.523 9.956 0.546 10.285 hybrid contribution 1.497 2.168 1.141 2.871 sum 4.020 12.124 1.687 12.884 Atomic orbital electron populations 1.20380 0.82668 1.04631 1.04357 1.22764 0.94923 0.82320 1.06587 1.83831 1.15152 1.35901 1.73086 1.22321 0.81466 0.90145 1.13239 1.98386 1.31906 1.65764 1.97273 1.21427 0.98661 0.91990 1.07215 1.21731 0.92705 0.99227 1.05257 1.17454 0.90066 0.81312 0.94707 0.96456 1.59211 1.12078 1.60096 1.04824 1.21912 1.51448 0.99994 0.91739 0.94991 1.26854 0.92956 0.93351 1.07901 1.70675 1.44531 1.38061 1.02056 0.83067 0.77024 0.75789 0.71068 1.21199 1.19876 1.20631 0.88677 0.88790 0.89788 0.82333 0.85788 0.87075 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.00 10.11 71.24 0.72 -1.28 15 2 C -0.02 -0.61 7.32 24.83 0.18 -0.43 15 3 O -0.18 -6.58 10.65 -3.17 -0.03 -6.61 15 4 C 0.00 0.13 7.93 67.00 0.53 0.66 15 5 Cl 0.04 1.01 29.30 -2.72 -0.08 0.93 15 6 C -0.17 -6.45 10.14 22.23 0.23 -6.22 15 7 C -0.19 -7.84 5.19 -19.94 -0.10 -7.95 15 8 C 0.27 13.32 2.23 43.42 0.10 13.42 15 9 H 0.02 0.92 7.88 -2.39 -0.02 0.90 15 10 N -0.83 -37.84 7.57 -174.96 -1.32 -39.17 15 11 C -0.61 -33.50 8.71 25.60 0.22 -33.28 15 12 H 0.03 1.79 7.74 -2.91 -0.02 1.77 15 13 C -0.01 -0.37 5.39 84.65 0.46 0.09 15 14 N -0.92 -54.72 13.51 21.45 0.29 -54.43 15 15 Si 1.11 49.87 29.90 68.60 2.05 51.92 15 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 15 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 19 H 0.09 2.53 8.14 -2.38 -0.02 2.51 15 20 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.08 2.99 7.87 -2.39 -0.02 2.97 15 22 H 0.16 5.42 7.55 -2.91 -0.02 5.40 15 23 H 0.33 14.48 8.11 -89.70 -0.73 13.75 15 24 H 0.32 12.66 9.06 -89.69 -0.81 11.85 15 25 H 0.28 16.76 6.39 -92.70 -0.59 16.17 15 Total: -1.00 -62.15 240.18 3.10 -59.04 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.13 Total: 23.31 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.33 Total: -34.99 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -1.03 Total: -93.60 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.03 Total: -6.61 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -62.15 3.10 -59.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251704.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.833 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds