Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47074 * 2 1 4 4 C 1.42903 * 113.99633 * 184.97850 * 3 2 1 5 5 H 1.08994 * 109.47271 * 34.89919 * 4 3 2 6 6 C 1.50697 * 109.47190 * 274.89016 * 4 3 2 7 7 H 1.08002 * 120.00621 * 294.92379 * 6 4 3 8 8 C 1.37877 * 119.99608 * 114.92749 * 6 4 3 9 9 N 1.31522 * 119.99955 * 184.81568 * 8 6 4 10 10 Si 1.86798 * 120.00409 * 4.81291 * 8 6 4 11 11 H 1.48504 * 109.47272 * 84.68430 * 10 8 6 12 12 H 1.48495 * 109.47517 * 204.68997 * 10 8 6 13 13 H 1.48504 * 109.47015 * 324.69148 * 10 8 6 14 14 C 1.53001 * 109.46698 * 154.89210 * 4 3 2 15 15 H 1.09000 * 109.52202 * 59.87590 * 14 4 3 16 16 C 1.53312 * 109.51173 * 299.71627 * 14 4 3 17 17 C 1.53172 * 108.96691 * 183.14201 * 16 14 4 18 18 C 1.53086 * 109.21545 * 56.95570 * 17 16 14 19 19 O 1.42905 * 109.41597 * 302.35292 * 18 17 16 20 20 C 1.42912 * 114.09427 * 61.15918 * 19 18 17 21 21 H 1.08998 * 109.47775 * 300.00315 * 1 2 3 22 22 H 1.09000 * 109.46830 * 59.99780 * 1 2 3 23 23 H 1.08994 * 109.47524 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47422 * 240.00072 * 2 1 3 25 25 H 1.09000 * 109.46674 * 119.99687 * 2 1 3 26 26 H 0.97000 * 120.00165 * 179.97438 * 9 8 6 27 27 H 1.09003 * 109.62302 * 63.26049 * 16 14 4 28 28 H 1.09006 * 109.52630 * 302.96244 * 16 14 4 29 29 H 1.08997 * 109.52154 * 297.01125 * 17 16 14 30 30 H 1.09002 * 109.51557 * 176.88924 * 17 16 14 31 31 H 1.08997 * 109.48434 * 62.33963 * 18 17 16 32 32 H 1.09006 * 109.47960 * 182.37409 * 18 17 16 33 33 H 1.09008 * 109.47380 * 58.82399 * 20 19 18 34 34 H 1.08996 * 109.47921 * 178.85947 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1133 5 1 3.8044 0.6681 -0.7575 6 6 4.0506 1.3403 1.2529 7 1 3.8571 2.0920 2.0038 8 6 4.8688 0.2695 1.5441 9 7 5.3374 0.1123 2.7629 10 14 5.3120 -0.9581 0.2077 11 1 6.4763 -0.4521 -0.5630 12 1 5.6580 -2.2620 0.8282 13 1 4.1540 -1.1359 -0.7049 14 6 3.7816 2.8217 -0.7174 15 1 3.4018 3.6161 -0.0749 16 6 3.1527 2.9434 -2.1103 17 6 3.5805 4.2748 -2.7351 18 6 5.1093 4.3425 -2.7792 19 8 5.6297 4.1922 -1.4568 20 6 5.3026 2.9456 -0.8393 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 5.9128 -0.6412 2.9679 27 1 2.0664 2.9127 -2.0254 28 1 3.4941 2.1198 -2.7374 29 1 3.1965 5.0992 -2.1343 30 1 3.1834 4.3462 -3.7477 31 1 5.4905 3.5420 -3.4131 32 1 5.4189 5.3060 -3.1843 33 1 5.6864 2.1268 -1.4479 34 1 5.7516 2.9027 0.1530 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253445.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = -113.181396 kcal Electronic energy + Delta-G solvation = -15377.852495 eV Core-core repulsion = 12889.194331 eV Total energy + Delta-G solvation = -2488.658163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94583 -36.89428 -33.52468 -32.62827 -31.33755 -29.96083 -26.97267 -24.27411 -23.61185 -21.94434 -20.69557 -19.39475 -17.15059 -15.99698 -15.67462 -15.08019 -14.72080 -14.24809 -14.14411 -13.79313 -13.14601 -12.76197 -12.58395 -12.10974 -12.07621 -11.71038 -11.46379 -11.09933 -11.02124 -10.77907 -10.58996 -10.53008 -10.01532 -9.74140 -9.56709 -9.14600 -8.90012 -8.75461 -8.09138 -6.22061 -4.25362 3.13776 3.20995 3.24409 4.24770 4.36159 4.72966 5.15613 5.25500 5.32937 5.38832 5.67833 5.70102 5.73598 5.87692 5.92965 6.00981 6.09407 6.20616 6.24196 6.31580 6.36253 6.45949 6.60649 6.64658 6.69532 6.82840 7.00562 7.14426 7.54629 7.74405 8.30442 8.53731 8.91220 9.40944 10.90838 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.013758 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.201604 B = 2034.688297 C = 2807.360377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 O -0.398 6.398 4 C 0.182 3.818 5 H 0.024 0.976 6 C -0.531 4.531 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.861 3.139 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.264 1.264 14 C -0.101 4.101 15 H 0.077 0.923 16 C -0.118 4.118 17 C -0.154 4.154 18 C 0.059 3.941 19 O -0.387 6.387 20 C 0.076 3.924 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 2.439 -10.303 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 O -0.318 6.318 4 C 0.126 3.874 5 H 0.041 0.959 6 C -0.568 4.568 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.524 5.524 10 Si 0.688 3.312 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.189 1.189 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.156 4.156 17 C -0.192 4.192 18 C -0.018 4.018 19 O -0.306 6.306 20 C 0.000 4.000 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.428 2.625 -10.077 10.963 hybrid contribution 0.288 -1.306 -0.746 1.531 sum -3.140 1.319 -10.823 11.346 Atomic orbital electron populations 1.21733 0.95566 1.00892 1.02178 1.22111 0.93514 0.86227 0.99246 1.87765 1.24891 1.24409 1.94756 1.20169 0.79229 0.92263 0.95714 0.95864 1.21454 1.27804 1.09756 0.97833 0.90237 1.25111 0.95542 0.96852 0.94967 1.69907 1.33456 1.30433 1.18644 0.87141 0.79532 0.81669 0.82861 1.19559 1.21023 1.18920 1.21688 0.95406 0.99964 0.94908 0.90454 1.21700 1.01381 0.95754 0.96768 1.22194 0.96851 0.99328 1.00811 1.22495 0.93179 1.00834 0.85299 1.87921 1.75211 1.38835 1.28629 1.22628 0.94732 0.83945 0.98735 0.92173 0.92876 0.92369 0.95507 0.93440 0.92376 0.91178 0.93019 0.91304 0.91877 0.93941 0.89799 0.94456 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 37.15 0.38 -1.99 16 2 C 0.07 1.37 6.48 37.15 0.24 1.61 16 3 O -0.40 -9.26 9.40 -35.23 -0.33 -9.59 16 4 C 0.18 4.33 1.66 -27.88 -0.05 4.28 16 5 H 0.02 0.56 4.15 -51.93 -0.22 0.35 16 6 C -0.53 -14.59 7.85 -34.44 -0.27 -14.86 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 9 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 10 Si 0.86 20.63 27.24 -169.99 -4.63 16.00 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.26 -6.06 6.21 56.52 0.35 -5.71 16 14 C -0.10 -2.11 2.18 -90.41 -0.20 -2.31 16 15 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.12 -2.08 5.13 -26.48 -0.14 -2.22 16 17 C -0.15 -2.27 6.13 -26.60 -0.16 -2.43 16 18 C 0.06 0.89 6.84 37.20 0.25 1.14 16 19 O -0.39 -7.37 10.77 -35.23 -0.38 -7.74 16 20 C 0.08 1.56 5.83 37.21 0.22 1.78 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.54 7.79 -51.93 -0.40 0.13 16 25 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.07 1.23 7.80 -51.93 -0.41 0.83 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.11 2.57 7.31 -51.93 -0.38 2.19 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -29.32 272.60 -5.94 -35.26 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.66 Total: 0.37 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 0.18 Total: -12.90 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.71 Total: -17.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.63 Total: 16.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.32 -5.94 -35.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253445.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.925 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds