Wall clock time and date at job start Mon Mar 30 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48505 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47037 * 299.99553 * 3 2 1 6 6 H 1.48501 * 109.47412 * 59.99681 * 3 2 1 7 7 C 1.40324 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99346 * 180.02562 * 7 2 1 9 9 C 1.40653 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.42012 * 126.84798 * 359.97438 * 9 7 2 11 11 C 1.34775 * 107.71065 * 180.25074 * 10 9 7 12 12 Cl 1.73596 * 125.17316 * 179.77637 * 11 10 9 13 13 N 1.36111 * 109.65272 * 359.62130 * 11 10 9 14 14 H 0.96991 * 125.39488 * 180.15347 * 13 11 10 15 15 C 1.37160 * 109.20719 * 0.38308 * 13 11 10 16 16 C 1.41841 * 126.43985 * 179.73560 * 15 13 11 17 17 O 1.21687 * 120.00114 * 180.02562 * 16 15 13 18 18 O 1.35006 * 119.99898 * 0.04155 * 16 15 13 19 19 H 0.97008 * 119.99871 * 359.97438 * 1 2 3 20 20 H 1.08002 * 126.13966 * 359.97438 * 10 9 7 21 21 H 0.96706 * 113.99725 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 -0.0006 5 1 1.8815 2.3964 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0077 -1.2153 0.0005 8 1 3.0878 -1.2152 0.0010 9 6 1.3044 -2.4333 0.0005 10 6 -0.1056 -2.6025 0.0005 11 6 -0.3597 -3.9261 0.0062 12 17 -1.9418 -4.6406 0.0140 13 7 0.8128 -4.6173 0.0013 14 1 0.8952 -5.5837 0.0017 15 6 1.8593 -3.7307 0.0010 16 6 3.2397 -4.0568 0.0018 17 8 4.0741 -3.1710 0.0019 18 8 3.6279 -5.3498 0.0022 19 1 -0.4850 0.8401 0.0004 20 1 -0.8419 -1.8124 0.0009 21 1 4.5872 -5.4725 0.0024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254674.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:43 Heat of formation + Delta-G solvation = -91.863128 kcal Electronic energy + Delta-G solvation = -12044.720556 eV Core-core repulsion = 9524.770792 eV Total energy + Delta-G solvation = -2519.949764 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.014 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.62443 -39.99703 -37.51497 -36.63274 -35.75316 -31.77721 -30.32216 -27.61111 -24.16242 -21.43947 -21.13689 -19.58463 -18.63309 -17.72686 -16.72396 -16.36439 -16.35656 -14.83676 -14.77186 -14.29303 -14.10614 -13.28494 -13.03325 -12.97183 -12.53262 -12.43316 -12.19707 -12.06271 -11.81786 -11.37597 -10.96440 -9.62747 -8.89689 -8.67212 -6.40563 0.48969 0.85099 1.42316 1.43241 1.58098 2.10007 2.23879 2.46213 2.78309 3.02015 3.43124 4.79539 4.95932 5.21143 5.35058 5.60139 5.81086 6.02684 6.09694 6.64158 6.75463 6.87943 7.01104 7.48327 8.23778 Molecular weight = 215.01amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.013436 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.953020 B = 2083.487036 C = 3238.592854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.239 4.239 11 C 0.126 3.874 12 Cl -0.021 7.021 13 N -0.555 5.555 14 H 0.416 0.584 15 C -0.222 4.222 16 C 0.531 3.469 17 O -0.584 6.584 18 O -0.522 6.522 19 H 0.296 0.704 20 H 0.165 0.835 21 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 -4.013 0.017 4.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.270 4.270 11 C -0.016 4.016 12 Cl 0.007 6.993 13 N -0.163 5.163 14 H 0.254 0.746 15 C -0.325 4.325 16 C 0.388 3.612 17 O -0.483 6.483 18 O -0.335 6.335 19 H 0.108 0.892 20 H 0.182 0.818 21 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.394 -3.847 0.015 4.531 hybrid contribution 0.748 -0.180 0.003 0.769 sum -1.646 -4.028 0.018 4.351 Atomic orbital electron populations 1.69554 1.08729 1.31071 1.32759 1.26995 0.95790 1.04694 0.91036 0.84994 0.78782 0.75381 0.79597 1.19331 1.18051 1.18039 1.19812 0.95664 0.90255 1.40379 0.89824 1.17877 0.92078 0.90682 0.90497 1.21551 0.96746 0.92583 1.16077 1.21152 0.80812 0.90897 1.08742 1.98312 1.19444 1.84205 1.97358 1.40919 1.02579 1.07761 1.65073 0.74588 1.17922 0.84808 0.89862 1.39860 1.17998 0.87877 0.80176 0.75162 1.90786 1.53868 1.49366 1.54263 1.84960 1.32480 1.28068 1.87952 0.89204 0.81839 0.72883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.84 10.34 21.89 0.23 -38.61 14 2 C 0.03 1.65 5.50 85.38 0.47 2.12 14 3 Si 0.99 38.25 29.56 68.60 2.03 40.28 14 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 14 5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 14 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 14 7 C -0.43 -24.15 8.93 23.37 0.21 -23.94 14 8 H 0.08 4.92 6.06 -2.91 -0.02 4.90 14 9 C 0.10 5.33 5.97 -21.05 -0.13 5.21 14 10 C -0.24 -12.03 9.63 22.41 0.22 -11.81 14 11 C 0.13 5.40 7.69 83.23 0.64 6.04 14 12 Cl -0.02 -0.71 29.29 -2.72 -0.08 -0.79 14 13 N -0.56 -23.64 6.04 -176.88 -1.07 -24.71 14 14 H 0.42 14.84 8.96 -92.72 -0.83 14.01 14 15 C -0.22 -11.19 6.98 39.91 0.28 -10.91 14 16 C 0.53 25.39 8.09 68.71 0.56 25.94 14 17 O -0.58 -31.33 15.49 19.22 0.30 -31.03 14 18 O -0.52 -18.97 13.53 -59.25 -0.80 -19.77 14 19 H 0.30 12.71 8.29 -92.70 -0.77 11.94 14 20 H 0.16 8.40 5.81 -2.91 -0.02 8.38 14 21 H 0.41 10.86 8.98 -74.05 -0.67 10.19 14 Total: -1.00 -62.37 216.48 2.67 -59.70 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.18 Total: 22.29 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 2.24 Total: -7.35 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.84 Total: -63.32 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.50 Total: -50.80 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -62.37 2.67 -59.70 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254674.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.164 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds