Wall clock time and date at job start Mon Mar 30 2020 03:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48499 * 109.46947 * 239.99950 * 3 2 1 5 5 H 1.48506 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47306 * 119.99966 * 3 2 1 7 7 C 1.37873 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99556 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46927 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47654 * 55.00074 * 10 9 7 12 12 N 1.46903 * 109.47377 * 294.99804 * 10 9 7 13 13 C 1.50704 * 109.46963 * 174.99956 * 10 9 7 14 14 C 1.34496 * 125.77838 * 260.32497 * 13 10 9 15 15 C 1.41401 * 106.85434 * 180.14073 * 14 13 10 16 16 C 1.34654 * 106.82697 * 359.60039 * 15 14 13 17 17 Cl 1.73597 * 125.80185 * 180.20551 * 16 15 14 18 18 O 1.34302 * 108.39989 * 0.24630 * 16 15 14 19 19 H 0.96998 * 120.00474 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.46996 * 59.99698 * 9 7 2 21 21 H 1.09003 * 109.46615 * 299.99686 * 9 7 2 22 22 H 1.00894 * 111.00179 * 176.04945 * 12 10 9 23 23 H 1.00903 * 110.99534 * 300.00203 * 12 10 9 24 24 H 1.08006 * 126.57223 * 359.97438 * 14 13 10 25 25 H 1.08002 * 126.58990 * 179.87384 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8423 12 7 3.0085 -3.6538 -1.2547 13 6 1.4960 -4.9636 0.1244 14 6 1.3349 -5.6737 1.2552 15 6 0.5760 -6.8177 0.9164 16 6 0.3110 -6.7334 -0.4011 17 17 -0.5988 -7.8841 -1.3296 18 8 0.8708 -5.6084 -0.8751 19 1 -0.4851 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 3.7161 -4.3730 -1.2524 23 1 2.3961 -3.7517 -2.0507 24 1 1.7149 -5.4202 2.2339 25 1 0.2646 -7.6053 1.5865 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260237.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:39 Heat of formation + Delta-G solvation = -16.914789 kcal Electronic energy + Delta-G solvation = -12029.286155 eV Core-core repulsion = 9648.419490 eV Total energy + Delta-G solvation = -2380.866665 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.69311 -38.05511 -37.19437 -34.52104 -34.11690 -30.45956 -29.85789 -26.07206 -23.24508 -22.95074 -21.15131 -18.92161 -18.31310 -17.37452 -16.88097 -16.36079 -16.11327 -14.85201 -14.40003 -14.36086 -13.93090 -13.85941 -13.28176 -13.14380 -12.82217 -12.52250 -12.37926 -12.29820 -11.65545 -11.29354 -10.95473 -10.52098 -9.71412 -9.32937 -8.12833 -6.20416 0.15777 0.49985 1.44988 1.48504 1.49613 1.56124 2.37091 2.49460 3.20880 3.75245 3.86451 3.95904 4.39397 4.53976 4.71580 4.80831 4.86862 5.36465 5.40234 5.54470 5.82704 5.88767 6.20759 6.36477 6.68369 6.93392 7.46826 8.99225 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.057396 B = 0.006536 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.725267 B = 4283.157238 C = 4383.763206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.069 0.931 9 C 0.039 3.961 10 C 0.187 3.813 11 H 0.116 0.884 12 N -0.824 5.824 13 C -0.028 4.028 14 C -0.210 4.210 15 C -0.164 4.164 16 C -0.010 4.010 17 Cl 0.031 6.969 18 O -0.187 6.187 19 H 0.260 0.740 20 H -0.014 1.014 21 H 0.000 1.000 22 H 0.346 0.654 23 H 0.340 0.660 24 H 0.176 0.824 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -14.349 0.807 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.087 0.913 9 C 0.002 3.998 10 C 0.075 3.925 11 H 0.133 0.867 12 N -0.353 5.353 13 C -0.080 4.080 14 C -0.230 4.230 15 C -0.184 4.184 16 C -0.085 4.085 17 Cl 0.060 6.940 18 O -0.086 6.086 19 H 0.069 0.931 20 H 0.004 0.996 21 H 0.018 0.982 22 H 0.159 0.841 23 H 0.153 0.847 24 H 0.193 0.807 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.472 -13.497 0.620 13.736 hybrid contribution -0.634 -0.248 -0.286 0.738 sum 1.839 -13.745 0.334 13.871 Atomic orbital electron populations 1.70106 1.07819 1.27551 1.52678 1.25937 0.95641 1.03239 0.95354 0.85496 0.78102 0.78258 0.79105 1.19600 1.21481 1.18970 1.21416 0.93728 0.90859 1.48696 0.91295 1.19016 0.93342 0.92460 0.95007 1.20369 0.92794 0.84668 0.94656 0.86662 1.58635 1.18155 1.55203 1.03261 1.24561 0.99263 0.97708 0.86487 1.21950 1.05186 0.95863 1.00013 1.21858 1.02435 1.01374 0.92745 1.22801 1.04715 0.89164 0.91861 1.98397 1.69955 1.50883 1.74767 1.83885 1.55145 1.30461 1.39096 0.93092 0.99556 0.98186 0.84080 0.84721 0.80673 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.29 21.45 0.28 -57.29 15 2 C -0.01 -0.30 5.46 84.65 0.46 0.17 15 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.51 -28.32 8.84 25.60 0.23 -28.09 15 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 15 9 C 0.04 2.03 4.60 29.85 0.14 2.17 15 10 C 0.19 7.39 3.15 44.17 0.14 7.53 15 11 H 0.12 4.25 8.13 -2.39 -0.02 4.23 15 12 N -0.82 -29.83 8.93 -171.79 -1.53 -31.36 15 13 C -0.03 -0.98 6.13 24.83 0.15 -0.83 15 14 C -0.21 -6.36 10.80 22.19 0.24 -6.12 15 15 C -0.16 -4.43 10.88 22.23 0.24 -4.18 15 16 C -0.01 -0.30 7.93 67.00 0.53 0.23 15 17 Cl 0.03 0.77 29.30 -2.72 -0.08 0.69 15 18 O -0.19 -6.77 10.53 -3.14 -0.03 -6.80 15 19 H 0.26 15.13 8.31 -92.71 -0.77 14.36 15 20 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 21 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 15 22 H 0.35 10.10 9.06 -89.70 -0.81 9.29 15 23 H 0.34 12.58 8.88 -89.69 -0.80 11.78 15 24 H 0.18 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.19 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -64.04 245.25 2.41 -61.64 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.39 Total: 15.62 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 2.13 Total: -29.13 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -1.25 Total: -88.65 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.03 Total: -6.80 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -64.04 2.41 -61.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260237.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.721 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds