Wall clock time and date at job start Mon Mar 30 2020 03:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47314 * 55.00220 * 10 9 7 12 12 N 1.46901 * 109.47113 * 294.99912 * 10 9 7 13 13 C 1.50698 * 109.46914 * 174.99892 * 10 9 7 14 14 C 1.41406 * 126.58359 * 99.70802 * 13 10 9 15 15 C 1.34492 * 106.85151 * 179.87054 * 14 13 10 16 16 O 1.34376 * 108.44523 * 0.39704 * 15 14 13 17 17 C 1.34302 * 109.47004 * 359.74413 * 16 15 14 18 18 Cl 1.73601 * 125.79700 * 180.02562 * 17 16 15 19 19 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 22 22 H 1.00906 * 110.99754 * 300.00169 * 12 10 9 23 23 H 1.00894 * 110.99732 * 63.95726 * 12 10 9 24 24 H 1.08000 * 126.57869 * 0.02562 * 14 13 10 25 25 H 1.08010 * 125.78045 * 180.14382 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9296 -3.5552 0.8413 12 7 3.0085 -3.6538 -1.2558 13 6 1.4961 -4.9636 0.1233 14 6 1.1685 -5.8509 -0.9279 15 6 0.5050 -6.8820 -0.3754 16 8 0.4056 -6.6640 0.9469 17 6 1.0047 -5.5023 1.2553 18 17 1.1258 -4.8126 2.8439 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5568 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.3962 -3.7517 -2.0518 23 1 3.5702 -2.8192 -1.3320 24 1 1.4077 -5.7259 -1.9737 25 1 0.1141 -7.7381 -0.9053 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262494.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:43 Heat of formation + Delta-G solvation = -19.515026 kcal Electronic energy + Delta-G solvation = -12212.650245 eV Core-core repulsion = 9831.670825 eV Total energy + Delta-G solvation = -2380.979420 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.55078 -37.98982 -37.56603 -34.72684 -33.04224 -30.47979 -29.68766 -26.30339 -23.45317 -22.48984 -20.93323 -19.04144 -18.27588 -17.21812 -16.56178 -16.46853 -15.90706 -15.13063 -14.50092 -14.18988 -13.91261 -13.64054 -13.39157 -13.13934 -12.85548 -12.50333 -12.26252 -12.13028 -11.98510 -11.20625 -10.66741 -10.57694 -9.56178 -9.20864 -8.20894 -6.32575 0.33207 0.63006 1.39507 1.41035 1.53177 1.62966 2.39791 2.70964 3.12733 3.69588 4.02630 4.18743 4.53717 4.63795 4.81027 4.92077 5.07975 5.40735 5.45631 5.57539 5.76746 5.97318 6.16425 6.39164 6.73232 6.83818 7.37212 8.90744 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.008859 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.164468 B = 3159.775717 C = 3487.912557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.013 3.987 10 C 0.166 3.834 11 H 0.068 0.932 12 N -0.824 5.824 13 C -0.131 4.131 14 C -0.207 4.207 15 C -0.012 4.012 16 O -0.181 6.181 17 C -0.014 4.014 18 Cl 0.018 6.982 19 H 0.262 0.738 20 H -0.010 1.010 21 H -0.006 1.006 22 H 0.337 0.663 23 H 0.347 0.653 24 H 0.171 0.829 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -11.519 -0.793 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.084 0.916 9 C -0.026 4.026 10 C 0.054 3.946 11 H 0.086 0.914 12 N -0.353 5.353 13 C -0.134 4.134 14 C -0.227 4.227 15 C -0.079 4.079 16 O -0.080 6.080 17 C -0.090 4.090 18 Cl 0.046 6.954 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.012 0.988 22 H 0.149 0.851 23 H 0.160 0.840 24 H 0.189 0.811 25 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 2.358 -12.191 -0.149 12.418 hybrid contribution -0.498 2.115 0.058 2.173 sum 1.860 -10.076 -0.091 10.247 Atomic orbital electron populations 1.70121 1.07887 1.27609 1.51568 1.25923 0.95611 1.03213 0.94722 0.85426 0.79320 0.78965 0.77491 1.18214 1.20551 1.20966 1.21572 0.93478 0.91640 1.50506 0.91608 1.19621 0.94544 0.93179 0.95213 1.19638 0.92997 0.88458 0.93550 0.91424 1.59137 1.27432 1.45500 1.03193 1.20463 1.02258 0.98797 0.91898 1.21857 1.04631 0.95123 1.01045 1.24976 1.02177 1.02355 0.78359 1.83938 1.61943 1.34233 1.27867 1.22109 1.07451 0.90065 0.89356 1.98398 1.96594 1.79849 1.20510 0.92899 0.99195 0.98807 0.85127 0.84016 0.81115 0.72317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 15 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 15 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 7 C -0.53 -29.13 8.55 25.60 0.22 -28.91 15 8 H 0.07 3.41 7.15 -2.91 -0.02 3.38 15 9 C 0.01 0.68 4.60 29.85 0.14 0.82 15 10 C 0.17 6.97 3.00 44.17 0.13 7.10 15 11 H 0.07 2.98 8.14 -2.39 -0.02 2.96 15 12 N -0.82 -30.25 8.92 -171.79 -1.53 -31.79 15 13 C -0.13 -4.95 5.30 -19.91 -0.11 -5.05 15 14 C -0.21 -6.18 10.12 22.19 0.22 -5.96 15 15 C -0.01 -0.30 12.09 66.96 0.81 0.51 15 16 O -0.18 -5.70 10.66 -3.18 -0.03 -5.74 15 17 C -0.01 -0.52 7.93 67.00 0.53 0.01 15 18 Cl 0.02 0.64 29.07 -2.72 -0.08 0.56 15 19 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 20 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 15 21 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 22 H 0.34 11.60 8.15 -89.69 -0.73 10.87 15 23 H 0.35 12.89 7.90 -89.70 -0.71 12.18 15 24 H 0.17 4.35 7.56 -2.91 -0.02 4.32 15 25 H 0.26 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -65.04 241.40 2.86 -62.18 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.21 Total: 15.98 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 2.41 Total: -30.82 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -1.25 Total: -87.69 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.03 Total: -5.74 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -0.08 Total: 0.56 kcal Total: -65.04 2.86 -62.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262494.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.661 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds