Wall clock time and date at job start Mon Mar 30 2020 03:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34485 * 125.77560 * 2 1 4 4 C 1.41416 * 106.85026 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.58223 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.46763 * 145.00554 * 5 4 3 7 7 N 1.46898 * 109.47446 * 25.00868 * 5 4 3 8 8 C 1.50699 * 109.47524 * 265.00235 * 5 4 3 9 9 H 1.08003 * 119.99845 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00144 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99737 * 180.02562 * 10 8 5 12 12 Si 1.86801 * 120.00012 * 359.97438 * 10 8 5 13 13 H 1.48498 * 109.46786 * 90.00565 * 12 10 8 14 14 H 1.48500 * 109.47255 * 210.00000 * 12 10 8 15 15 H 1.48495 * 109.47129 * 330.00245 * 12 10 8 16 16 C 1.34645 * 106.82833 * 0.02562 * 4 3 2 17 17 Cl 1.73598 * 125.80024 * 179.97438 * 16 4 3 18 18 O 1.34309 * 108.39767 * 359.73533 * 16 4 3 19 19 H 1.09001 * 109.46953 * 89.99869 * 1 2 3 20 20 H 1.09000 * 109.47318 * 209.99466 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.00097 * 1 2 3 22 22 H 1.07997 * 126.57925 * 359.96444 * 3 2 1 23 23 H 1.00898 * 111.00054 * 299.99208 * 7 5 4 24 24 H 1.00905 * 111.00308 * 63.94927 * 7 5 4 25 25 H 0.97012 * 120.00009 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2933 1.0911 0.0000 4 6 3.6310 0.6324 0.0006 5 6 4.8730 1.4858 0.0003 6 1 5.6491 0.9980 0.5902 7 7 4.5658 2.7980 0.5848 8 6 5.3575 1.6674 -1.4151 9 1 4.8196 1.2108 -2.2328 10 6 6.4876 2.4163 -1.6662 11 7 6.9100 2.5751 -2.9015 12 14 7.4177 3.2066 -0.2521 13 1 8.4536 2.2663 0.2458 14 1 8.0684 4.4553 -0.7240 15 1 6.4705 3.5265 0.8460 16 6 3.5817 -0.7131 0.0004 17 17 4.9516 -1.7794 0.0003 18 8 2.2926 -1.0901 0.0055 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3633 0.8900 0.5138 22 1 1.9659 2.1203 -0.0005 23 1 3.8486 3.2707 0.0555 24 1 4.3003 2.7089 1.5542 25 1 7.7049 3.1024 -3.0783 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279591.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:39 Heat of formation + Delta-G solvation = 15.400618 kcal Electronic energy + Delta-G solvation = -12361.072467 eV Core-core repulsion = 9981.607103 eV Total energy + Delta-G solvation = -2379.465364 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.17072 -36.37519 -35.42152 -32.50527 -31.79213 -30.53458 -26.82169 -25.59494 -22.53854 -20.58557 -19.04403 -17.00079 -16.82849 -15.87692 -14.74248 -14.32256 -14.01531 -13.35033 -13.04382 -12.95790 -12.87162 -12.14704 -12.01319 -11.51590 -11.25906 -10.79370 -10.64921 -10.47347 -10.02889 -9.36124 -8.89538 -8.48791 -7.69757 -7.24328 -5.95350 -4.04647 1.78188 2.00590 3.06384 3.54756 3.64491 3.90372 3.95816 4.74892 5.03360 5.30540 5.41466 5.45750 5.48540 5.72426 5.93919 6.05332 6.31390 6.35890 6.89377 6.98085 7.38060 7.65646 8.19730 8.36591 8.73730 9.05095 9.68697 11.14571 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.011189 C = 0.009697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.606943 B = 2501.867941 C = 2886.727763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.017 4.017 3 C -0.197 4.197 4 C -0.120 4.120 5 C 0.245 3.755 6 H 0.049 0.951 7 N -0.831 5.831 8 C -0.513 4.513 9 H 0.068 0.932 10 C 0.086 3.914 11 N -0.900 5.900 12 Si 0.863 3.137 13 H -0.296 1.296 14 H -0.304 1.304 15 H -0.192 1.192 16 C 0.003 3.997 17 Cl 0.019 6.981 18 O -0.181 6.181 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.148 0.852 23 H 0.330 0.670 24 H 0.308 0.692 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -4.483 8.045 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.217 4.217 4 C -0.124 4.124 5 C 0.135 3.865 6 H 0.067 0.933 7 N -0.359 5.359 8 C -0.552 4.552 9 H 0.086 0.914 10 C -0.118 4.118 11 N -0.537 5.537 12 Si 0.690 3.310 13 H -0.224 1.224 14 H -0.231 1.231 15 H -0.114 1.114 16 C -0.072 4.072 17 Cl 0.048 6.952 18 O -0.081 6.081 19 H 0.098 0.902 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.166 0.834 23 H 0.143 0.857 24 H 0.119 0.881 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.387 -4.599 7.784 13.033 hybrid contribution -0.120 -0.108 0.419 0.449 sum -9.507 -4.707 8.203 13.410 Atomic orbital electron populations 1.20243 0.85100 1.03586 1.03343 1.22231 0.93458 0.83824 1.07171 1.21347 0.91981 0.99268 1.09112 1.21680 0.98233 0.91864 1.00653 1.18103 0.87393 0.83827 0.97142 0.93336 1.60055 1.48857 1.22413 1.04587 1.20648 1.11147 1.33758 0.89602 0.91383 1.24950 0.96459 0.94551 0.95862 1.69960 1.24134 1.39805 1.19850 0.87250 0.79267 0.78006 0.86447 1.22403 1.23146 1.11353 1.22057 0.80037 0.90029 1.15117 1.98387 1.33419 1.66143 1.97282 1.83801 1.15502 1.35425 1.73324 0.90247 0.90916 0.89462 0.83420 0.85663 0.88136 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.42 36.01 0.38 -0.33 15 2 C -0.02 -0.27 7.32 -35.63 -0.26 -0.53 15 3 C -0.20 -3.50 10.07 -39.70 -0.40 -3.90 15 4 C -0.12 -2.51 5.19 -104.69 -0.54 -3.05 15 5 C 0.25 5.69 2.37 -70.02 -0.17 5.52 15 6 H 0.05 1.17 7.49 -51.92 -0.39 0.78 15 7 N -0.83 -17.05 5.61 -6.65 -0.04 -17.09 15 8 C -0.51 -14.46 9.29 -34.44 -0.32 -14.78 15 9 H 0.07 2.14 7.98 -52.48 -0.42 1.72 15 10 C 0.09 2.50 5.47 -17.82 -0.10 2.40 15 11 N -0.90 -28.08 13.96 55.43 0.77 -27.31 15 12 Si 0.86 21.75 26.94 -169.99 -4.58 17.17 15 13 H -0.30 -7.60 7.11 56.52 0.40 -7.20 15 14 H -0.30 -7.86 7.11 56.52 0.40 -7.46 15 15 H -0.19 -4.44 5.17 56.52 0.29 -4.15 15 16 C 0.00 0.06 7.93 29.46 0.23 0.29 15 17 Cl 0.02 0.36 29.00 -51.86 -1.50 -1.14 15 18 O -0.18 -3.37 10.65 5.52 0.06 -3.31 15 19 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.15 2.29 7.55 -52.49 -0.40 1.89 15 23 H 0.33 6.49 8.11 -39.29 -0.32 6.17 15 24 H 0.31 5.44 9.06 -39.29 -0.36 5.09 15 25 H 0.26 7.74 8.31 -40.81 -0.34 7.40 15 LS Contribution 236.54 15.07 3.56 3.56 Total: -1.00 -32.04 236.54 -5.29 -37.33 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.39 Total: 5.16 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.18 Total: -14.38 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.74 Total: -44.40 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.58 Total: 17.17 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.50 Total: -1.14 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.04 -5.29 -37.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279591.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.734 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds