Wall clock time and date at job start Mon Mar 30 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34486 * 125.78224 * 2 1 4 4 C 1.41408 * 106.85276 * 179.91480 * 3 2 1 5 5 C 1.50703 * 126.58384 * 180.13763 * 4 3 2 6 6 H 1.08997 * 109.46542 * 220.22619 * 5 4 3 7 7 N 1.46904 * 109.47025 * 340.22711 * 5 4 3 8 8 C 1.50693 * 109.47126 * 100.22835 * 5 4 3 9 9 H 1.08001 * 120.00324 * 359.97438 * 8 5 4 10 10 C 1.37882 * 119.99985 * 179.97438 * 8 5 4 11 11 N 1.31514 * 119.99910 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00282 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46839 * 90.00084 * 12 10 8 14 14 H 1.48496 * 109.47309 * 210.00264 * 12 10 8 15 15 H 1.48500 * 109.46789 * 330.00545 * 12 10 8 16 16 C 1.34651 * 106.82730 * 0.34793 * 4 3 2 17 17 Cl 1.73602 * 125.79769 * 179.75466 * 16 4 3 18 18 O 1.34305 * 108.39966 * 359.78531 * 16 4 3 19 19 H 1.08995 * 109.47411 * 179.71622 * 1 2 3 20 20 H 1.08998 * 109.46596 * 299.71562 * 1 2 3 21 21 H 1.09004 * 109.46950 * 59.71381 * 1 2 3 22 22 H 1.07998 * 126.56996 * 359.97438 * 3 2 1 23 23 H 1.00900 * 110.99939 * 296.04567 * 7 5 4 24 24 H 1.00893 * 110.99959 * 60.00109 * 7 5 4 25 25 H 0.96998 * 120.00262 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2934 1.0910 0.0000 4 6 3.6310 0.6323 0.0020 5 6 4.8732 1.4856 0.0057 6 1 5.6182 1.0454 -0.6571 7 7 4.5397 2.8378 -0.4616 8 6 5.4273 1.5601 1.4051 9 1 4.9296 1.0418 2.2113 10 6 6.5698 2.2900 1.6562 11 7 7.1757 2.9216 0.6745 12 14 7.2563 2.3830 3.3910 13 1 8.2184 1.2718 3.6028 14 1 7.9510 3.6819 3.5795 15 1 6.1453 2.2691 4.3697 16 6 3.5816 -0.7133 -0.0047 17 17 4.9515 -1.7797 -0.0116 18 8 2.2926 -1.0902 -0.0059 19 1 -0.3634 -1.0276 -0.0051 20 1 -0.3632 0.5094 0.8925 21 1 -0.3633 0.5183 -0.8874 22 1 1.9660 2.1202 -0.0004 23 1 4.2266 2.8220 -1.4207 24 1 3.8504 3.2674 0.1368 25 1 7.9792 3.4354 0.8512 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279592.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:42 Heat of formation + Delta-G solvation = 9.439562 kcal Electronic energy + Delta-G solvation = -12321.218630 eV Core-core repulsion = 9941.494775 eV Total energy + Delta-G solvation = -2379.723855 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.05420 -36.24567 -35.10986 -32.45209 -31.63801 -30.11075 -26.60497 -25.40064 -22.58898 -20.47128 -19.02937 -16.88440 -16.48382 -15.72043 -14.59923 -14.13877 -14.00777 -13.28971 -12.99589 -12.82420 -12.48108 -12.15943 -11.81261 -11.41903 -11.06256 -10.75662 -10.67893 -10.53899 -9.90359 -9.47320 -8.75118 -8.37038 -7.58650 -7.11620 -5.82537 -3.96149 1.90019 2.09503 3.18291 3.37359 3.43964 3.48229 4.00982 4.53928 5.12200 5.40459 5.48627 5.52008 5.55744 5.77723 6.16327 6.25995 6.51684 6.55017 7.06903 7.40340 7.56877 7.96270 8.24443 8.67356 9.04471 9.18625 9.71493 11.22076 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.010623 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.249301 B = 2635.253898 C = 2972.954553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.020 4.020 3 C -0.201 4.201 4 C -0.125 4.125 5 C 0.280 3.720 6 H 0.052 0.948 7 N -0.806 5.806 8 C -0.523 4.523 9 H 0.052 0.948 10 C 0.084 3.916 11 N -0.848 5.848 12 Si 0.883 3.117 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.003 4.003 17 Cl 0.018 6.982 18 O -0.184 6.184 19 H 0.071 0.929 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.146 0.854 23 H 0.298 0.702 24 H 0.318 0.682 25 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -5.215 -2.129 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C -0.220 4.220 4 C -0.130 4.130 5 C 0.170 3.830 6 H 0.070 0.930 7 N -0.332 5.332 8 C -0.562 4.562 9 H 0.070 0.930 10 C -0.122 4.122 11 N -0.483 5.483 12 Si 0.710 3.290 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.078 4.078 17 Cl 0.046 6.954 18 O -0.083 6.083 19 H 0.090 0.910 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.164 0.836 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.112 -5.295 -2.057 10.738 hybrid contribution -0.363 -0.371 0.927 1.063 sum -9.475 -5.666 -1.130 11.098 Atomic orbital electron populations 1.20227 0.85262 1.03455 1.03271 1.22205 0.93373 0.83943 1.07532 1.21366 0.92248 0.99168 1.09247 1.22304 0.98918 0.92223 0.99563 1.17736 0.85395 0.82730 0.97116 0.93041 1.59177 1.48646 1.22280 1.03058 1.20747 1.10124 1.32888 0.92398 0.93010 1.24914 0.96319 0.94849 0.96144 1.70100 1.17703 1.29963 1.30549 0.86776 0.79209 0.77264 0.85721 1.20748 1.21278 1.20065 1.22071 0.79817 0.90095 1.15803 1.98379 1.33540 1.66140 1.97319 1.83790 1.15668 1.35439 1.73438 0.90999 0.89900 0.89978 0.83613 0.89209 0.87054 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.42 36.01 0.38 -0.35 15 2 C -0.02 -0.34 7.32 -35.63 -0.26 -0.60 15 3 C -0.20 -3.73 10.02 -39.70 -0.40 -4.13 15 4 C -0.13 -2.76 5.23 -104.68 -0.55 -3.31 15 5 C 0.28 7.04 2.86 -70.02 -0.20 6.84 15 6 H 0.05 1.43 8.14 -51.93 -0.42 1.01 15 7 N -0.81 -18.97 8.26 -6.65 -0.05 -19.03 15 8 C -0.52 -14.50 8.71 -34.44 -0.30 -14.80 15 9 H 0.05 1.47 7.74 -52.49 -0.41 1.06 15 10 C 0.08 2.37 5.39 -17.82 -0.10 2.27 15 11 N -0.85 -24.80 12.77 55.43 0.71 -24.09 15 12 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 15 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 15 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 16 C 0.00 -0.06 7.93 29.46 0.23 0.17 15 17 Cl 0.02 0.35 29.07 -51.86 -1.51 -1.16 15 18 O -0.18 -3.53 10.65 5.51 0.06 -3.48 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.15 2.41 7.56 -52.49 -0.40 2.01 15 23 H 0.30 6.25 9.06 -39.29 -0.36 5.90 15 24 H 0.32 7.09 8.15 -39.30 -0.32 6.77 15 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 242.88 15.07 3.66 3.66 Total: -1.00 -30.53 242.88 -5.66 -36.18 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -2.30 Total: 5.23 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.19 Total: -13.91 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.65 Total: -43.12 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.06 Total: -3.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.51 Total: -1.16 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.53 -5.66 -36.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279592.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.621 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds