Wall clock time and date at job start Mon Mar 30 2020 03:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34486 * 125.78224 * 2 1 4 4 C 1.41408 * 106.85276 * 179.91480 * 3 2 1 5 5 C 1.50703 * 126.58384 * 180.13763 * 4 3 2 6 6 H 1.08997 * 109.46542 * 220.22619 * 5 4 3 7 7 N 1.46904 * 109.47025 * 340.22711 * 5 4 3 8 8 C 1.50693 * 109.47126 * 100.22835 * 5 4 3 9 9 H 1.08001 * 120.00324 * 359.97438 * 8 5 4 10 10 C 1.37882 * 119.99985 * 179.97438 * 8 5 4 11 11 N 1.31514 * 119.99910 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00282 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.46839 * 90.00084 * 12 10 8 14 14 H 1.48496 * 109.47309 * 210.00264 * 12 10 8 15 15 H 1.48500 * 109.46789 * 330.00545 * 12 10 8 16 16 C 1.34651 * 106.82730 * 0.34793 * 4 3 2 17 17 Cl 1.73602 * 125.79769 * 179.75466 * 16 4 3 18 18 O 1.34305 * 108.39966 * 359.78531 * 16 4 3 19 19 H 1.08995 * 109.47411 * 179.71622 * 1 2 3 20 20 H 1.08998 * 109.46596 * 299.71562 * 1 2 3 21 21 H 1.09004 * 109.46950 * 59.71381 * 1 2 3 22 22 H 1.07998 * 126.56996 * 359.97438 * 3 2 1 23 23 H 1.00900 * 110.99939 * 296.04567 * 7 5 4 24 24 H 1.00893 * 110.99959 * 60.00109 * 7 5 4 25 25 H 0.96998 * 120.00262 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2934 1.0910 0.0000 4 6 3.6310 0.6323 0.0020 5 6 4.8732 1.4856 0.0057 6 1 5.6182 1.0454 -0.6571 7 7 4.5397 2.8378 -0.4616 8 6 5.4273 1.5601 1.4051 9 1 4.9296 1.0418 2.2113 10 6 6.5698 2.2900 1.6562 11 7 7.1757 2.9216 0.6745 12 14 7.2563 2.3830 3.3910 13 1 8.2184 1.2718 3.6028 14 1 7.9510 3.6819 3.5795 15 1 6.1453 2.2691 4.3697 16 6 3.5816 -0.7133 -0.0047 17 17 4.9515 -1.7797 -0.0116 18 8 2.2926 -1.0902 -0.0059 19 1 -0.3634 -1.0276 -0.0051 20 1 -0.3632 0.5094 0.8925 21 1 -0.3633 0.5183 -0.8874 22 1 1.9660 2.1202 -0.0004 23 1 4.2266 2.8220 -1.4207 24 1 3.8504 3.2674 0.1368 25 1 7.9792 3.4354 0.8512 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279592.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:42 Heat of formation + Delta-G solvation = -11.605593 kcal Electronic energy + Delta-G solvation = -12322.131216 eV Core-core repulsion = 9941.494775 eV Total energy + Delta-G solvation = -2380.636441 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.54380 -37.81374 -36.95573 -34.15604 -33.20847 -31.76288 -28.33692 -27.00446 -24.44779 -21.98057 -20.62295 -18.55755 -18.38403 -17.27341 -16.56933 -16.03074 -15.48390 -14.83733 -14.24971 -14.09185 -13.97486 -13.86548 -13.22348 -12.96644 -12.85610 -12.68140 -12.53532 -12.09004 -11.84410 -11.46428 -10.56713 -10.37125 -9.12898 -8.96222 -7.95880 -6.15939 0.37402 0.63876 1.43384 1.43902 1.52929 1.64949 2.49623 2.64306 3.27533 3.92357 4.00825 4.44581 4.55152 4.65671 4.75674 4.79632 4.97740 5.16875 5.48082 5.56013 5.77755 6.01192 6.21373 6.67819 7.11440 7.28008 7.55234 9.07801 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.010623 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.249301 B = 2635.253898 C = 2972.954553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.001 3.999 3 C -0.221 4.221 4 C -0.149 4.149 5 C 0.289 3.711 6 H 0.015 0.985 7 N -0.815 5.815 8 C -0.532 4.532 9 H 0.039 0.961 10 C 0.038 3.962 11 N -0.879 5.879 12 Si 0.943 3.057 13 H -0.278 1.278 14 H -0.282 1.282 15 H -0.273 1.273 16 C -0.022 4.022 17 Cl 0.018 6.982 18 O -0.187 6.187 19 H 0.087 0.913 20 H 0.104 0.896 21 H 0.108 0.892 22 H 0.164 0.836 23 H 0.312 0.688 24 H 0.325 0.675 25 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 -5.242 -1.573 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.240 4.240 4 C -0.153 4.153 5 C 0.178 3.822 6 H 0.033 0.967 7 N -0.342 5.342 8 C -0.571 4.571 9 H 0.058 0.942 10 C -0.165 4.165 11 N -0.515 5.515 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.096 4.096 17 Cl 0.047 6.953 18 O -0.086 6.086 19 H 0.106 0.894 20 H 0.122 0.878 21 H 0.127 0.873 22 H 0.182 0.818 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.918 -5.330 -1.501 12.242 hybrid contribution 0.104 -0.389 0.713 0.819 sum -10.814 -5.719 -0.788 12.258 Atomic orbital electron populations 1.20553 0.80735 1.05272 1.05516 1.23298 0.95497 0.82554 1.03518 1.21544 0.90872 1.00767 1.10820 1.22085 0.99343 0.92565 1.01346 1.17285 0.86127 0.83737 0.95027 0.96709 1.58966 1.49313 1.21749 1.04133 1.20955 1.10344 1.32447 0.93352 0.94235 1.25594 0.96646 0.94637 0.99639 1.70212 1.18135 1.30796 1.32356 0.85822 0.78500 0.77350 0.81429 1.20377 1.20752 1.19731 1.22118 0.80719 0.90106 1.16705 1.98366 1.33696 1.65895 1.97351 1.83828 1.15003 1.36437 1.73362 0.89432 0.87775 0.87327 0.81812 0.87648 0.86245 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.42 71.24 0.74 -0.40 15 2 C 0.00 0.04 7.32 24.83 0.18 0.23 15 3 C -0.22 -7.84 10.02 22.19 0.22 -7.62 15 4 C -0.15 -6.52 5.23 -19.90 -0.10 -6.63 15 5 C 0.29 14.73 2.86 43.42 0.12 14.85 15 6 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 7 N -0.81 -38.43 8.26 -174.95 -1.45 -39.87 15 8 C -0.53 -29.82 8.71 25.60 0.22 -29.60 15 9 H 0.04 2.26 7.74 -2.91 -0.02 2.24 15 10 C 0.04 2.16 5.39 84.66 0.46 2.62 15 11 N -0.88 -51.87 12.77 21.45 0.27 -51.59 15 12 Si 0.94 44.47 29.54 68.60 2.03 46.50 15 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 16 C -0.02 -0.90 7.93 67.00 0.53 -0.37 15 17 Cl 0.02 0.73 29.07 -2.72 -0.08 0.65 15 18 O -0.19 -6.89 10.65 -3.19 -0.03 -6.92 15 19 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.11 1.44 8.14 -2.39 -0.02 1.43 15 22 H 0.16 5.06 7.56 -2.91 -0.02 5.04 15 23 H 0.31 13.08 9.06 -89.69 -0.81 12.27 15 24 H 0.33 14.37 8.15 -89.70 -0.73 13.64 15 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 15 Total: -1.00 -65.42 242.88 2.80 -62.61 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.32 Total: 15.55 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 2.38 Total: -26.92 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -1.17 Total: -91.47 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.03 Total: -6.92 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -65.42 2.80 -62.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279592.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.007 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds