Wall clock time and date at job start Mon Mar 30 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46841 * 111.00169 * 2 1 4 4 C 1.53040 * 109.51730 * 174.16176 * 3 2 1 5 5 C 1.53100 * 109.28541 * 59.18550 * 4 3 2 6 6 C 1.50697 * 109.57883 * 62.27637 * 5 4 3 7 7 H 1.08005 * 120.00044 * 358.50321 * 6 5 4 8 8 C 1.37883 * 120.00039 * 178.50756 * 6 5 4 9 9 N 1.31510 * 119.99932 * 2.50970 * 8 6 5 10 10 Si 1.86795 * 119.99830 * 182.51117 * 8 6 5 11 11 H 1.48507 * 109.47023 * 89.99643 * 10 8 6 12 12 H 1.48499 * 109.46982 * 209.99789 * 10 8 6 13 13 H 1.48502 * 109.47446 * 330.00039 * 10 8 6 14 14 C 1.52998 * 109.52244 * 182.43548 * 5 4 3 15 15 O 1.42903 * 109.47348 * 294.48769 * 14 5 4 16 16 N 1.46298 * 114.00011 * 179.97438 * 15 14 5 17 17 C 1.53121 * 109.15688 * 302.33811 * 5 4 3 18 18 C 1.46841 * 111.00064 * 235.78687 * 2 1 3 19 19 H 1.09004 * 109.46748 * 60.00065 * 1 2 3 20 20 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47109 * 300.00376 * 1 2 3 22 22 H 1.09003 * 109.46724 * 294.17656 * 3 2 1 23 23 H 1.09009 * 109.46308 * 54.15485 * 3 2 1 24 24 H 1.09001 * 109.50171 * 179.11267 * 4 3 2 25 25 H 1.08995 * 109.50172 * 299.23561 * 4 3 2 26 26 H 0.96997 * 119.99824 * 180.02562 * 9 8 6 27 27 H 1.08996 * 109.47561 * 54.49400 * 14 5 4 28 28 H 1.09008 * 109.47047 * 174.48871 * 14 5 4 29 29 H 1.00904 * 110.99867 * 56.05285 * 16 15 14 30 30 H 1.00898 * 110.99758 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.49844 * 297.71612 * 17 5 4 32 32 H 1.08996 * 109.50011 * 177.59560 * 17 5 4 33 33 H 1.08996 * 109.46830 * 305.85749 * 18 2 1 34 34 H 1.09006 * 109.46519 * 65.83921 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3339 0.1467 5 6 4.1189 0.5369 -1.0143 6 6 3.8021 1.2255 -2.3168 7 1 3.2087 2.1279 -2.3202 8 6 4.2698 0.7034 -3.5042 9 7 4.9503 -0.4219 -3.5049 10 14 3.9369 1.5947 -5.1117 11 1 5.0397 2.5510 -5.3851 12 1 3.8529 0.6068 -6.2172 13 1 2.6535 2.3350 -5.0107 14 6 5.6361 0.4449 -0.8404 15 8 6.2088 1.7491 -0.9553 16 7 7.6636 1.7757 -0.8034 17 6 3.5182 -0.8716 -1.0208 18 6 1.9953 -0.7708 -1.1336 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.7326 1.8609 -0.9376 23 1 1.5636 1.9257 0.8331 24 1 3.9101 2.3509 0.1309 25 1 3.7813 0.8565 1.0906 26 1 5.2796 -0.7890 -4.3402 27 1 5.8649 0.0329 0.1425 28 1 6.0516 -0.2036 -1.6118 29 1 8.1076 1.1570 -1.4653 30 1 8.0193 2.7157 -0.8919 31 1 3.7814 -1.3836 -0.0952 32 1 3.9100 -1.4303 -1.8707 33 1 1.5635 -1.7715 -1.1242 34 1 1.7327 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:22 Heat of formation + Delta-G solvation = -18.786979 kcal Electronic energy + Delta-G solvation = -15676.908893 eV Core-core repulsion = 13224.636730 eV Total energy + Delta-G solvation = -2452.272163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12909 -37.43312 -35.46826 -33.31601 -31.38417 -30.56378 -28.30982 -26.89372 -25.09808 -23.71642 -22.13419 -20.44438 -17.71376 -17.16790 -16.96178 -16.83247 -16.01525 -15.73502 -15.46968 -15.16273 -14.79203 -14.08795 -13.84632 -13.44096 -13.10311 -12.91964 -12.85487 -12.66964 -12.41733 -12.29331 -12.01628 -11.67718 -11.38812 -11.02077 -10.73840 -10.49879 -10.34103 -9.62639 -9.07225 -7.97474 -6.07089 1.36620 1.40653 1.46820 2.24097 2.45535 3.25880 3.27171 4.26669 4.32203 4.42643 4.51067 4.66929 4.71908 4.77504 4.82745 4.87508 4.97927 5.04244 5.10350 5.16683 5.35401 5.37874 5.45882 5.62723 5.65152 5.78677 6.07069 6.18171 6.35941 6.41922 6.46492 6.60782 6.91841 7.56107 9.01535 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.014897 C = 0.010808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.862261 B = 1879.077737 C = 2590.115741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.072 3.928 4 C -0.093 4.093 5 C 0.069 3.931 6 C -0.485 4.485 7 H 0.038 0.962 8 C 0.030 3.970 9 N -0.906 5.906 10 Si 0.932 3.068 11 H -0.286 1.286 12 H -0.285 1.285 13 H -0.278 1.278 14 C 0.089 3.911 15 O -0.245 6.245 16 N -0.687 5.687 17 C -0.093 4.093 18 C 0.080 3.920 19 H 0.015 0.985 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.019 0.981 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.257 0.743 27 H 0.010 0.990 28 H 0.055 0.945 29 H 0.338 0.662 30 H 0.365 0.635 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 0.763 4.130 5.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.275 5.275 3 C -0.056 4.056 4 C -0.131 4.131 5 C 0.067 3.933 6 C -0.523 4.523 7 H 0.057 0.943 8 C -0.169 4.169 9 N -0.546 5.546 10 Si 0.760 3.240 11 H -0.213 1.213 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.011 3.989 15 O -0.260 6.260 16 N -0.252 5.252 17 C -0.132 4.132 18 C -0.048 4.048 19 H 0.033 0.967 20 H 0.094 0.906 21 H 0.098 0.902 22 H 0.037 0.963 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.178 0.822 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.870 0.330 5.133 5.890 hybrid contribution 0.075 1.039 -2.908 3.089 sum -2.794 1.369 2.225 3.825 Atomic orbital electron populations 1.22388 0.86855 1.02366 1.00554 1.62044 1.08091 1.13856 1.43492 1.21915 0.95491 0.89002 0.99207 1.21474 0.94542 0.99322 0.97720 1.18259 0.88730 0.93211 0.93094 1.21052 1.31282 1.08667 0.91340 0.94332 1.25325 0.95460 0.95436 1.00650 1.69865 1.38451 1.19694 1.26603 0.85966 0.78026 0.78579 0.81384 1.21292 1.21115 1.20282 1.22474 0.96224 0.83741 0.96467 1.90675 1.09929 1.29594 1.95783 1.64294 0.90600 1.15390 1.54948 1.21393 0.94050 0.97995 0.99730 1.21798 0.95760 0.96389 0.90805 0.96659 0.90642 0.90210 0.96288 0.90528 0.93480 0.93364 0.93354 0.97155 0.92687 0.85236 0.82161 0.94894 0.90901 0.91537 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.59 127.69 1.22 1.99 16 2 N -0.55 -20.38 4.91 -922.58 -4.53 -24.91 16 3 C 0.07 2.77 5.25 86.33 0.45 3.22 16 4 C -0.09 -3.97 4.71 30.64 0.14 -3.83 16 5 C 0.07 3.29 0.34 -52.86 -0.02 3.27 16 6 C -0.49 -25.34 5.74 25.60 0.15 -25.19 16 7 H 0.04 2.09 6.82 -2.91 -0.02 2.07 16 8 C 0.03 1.55 5.14 84.66 0.44 1.99 16 9 N -0.91 -48.32 9.42 21.45 0.20 -48.12 16 10 Si 0.93 43.18 29.54 68.60 2.03 45.20 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.09 4.27 4.95 71.98 0.36 4.63 16 15 O -0.25 -11.57 11.05 -50.15 -0.55 -12.13 16 16 N -0.69 -25.33 10.79 37.02 0.40 -24.93 16 17 C -0.09 -4.26 4.71 30.65 0.14 -4.12 16 18 C 0.08 3.31 5.26 86.33 0.45 3.77 16 19 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 20 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.02 0.81 6.76 -2.39 -0.02 0.79 16 23 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 24 H 0.05 2.08 7.91 -2.39 -0.02 2.06 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 2.87 6.21 -2.38 -0.01 2.86 16 29 H 0.34 11.70 9.18 -89.69 -0.82 10.88 16 30 H 0.37 11.15 9.25 -89.70 -0.83 10.32 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 33 H 0.07 2.46 8.08 -2.39 -0.02 2.45 16 34 H 0.02 0.80 7.31 -2.38 -0.02 0.78 16 Total: -1.00 -57.36 265.55 0.33 -57.04 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.56 Total: 22.12 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 3.34 Total: -14.27 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -3.93 Total: -97.96 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.55 Total: -12.13 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -57.36 0.33 -57.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.252 kcal (2) G-P(sol) polarization free energy of solvation -57.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds