Wall clock time and date at job start Mon Mar 30 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35556 * 116.99822 * 2 1 4 4 N 1.29502 * 124.93767 * 0.02562 * 3 2 1 5 5 C 1.32080 * 116.92166 * 180.02562 * 4 3 2 6 6 C 1.33381 * 114.55476 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.96764 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47551 * 24.99547 * 7 6 5 9 9 O 1.42899 * 109.47136 * 144.99852 * 7 6 5 10 10 C 1.50702 * 109.46869 * 264.99602 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 S 1.70965 * 124.93947 * 180.33618 * 3 2 1 19 19 H 1.08998 * 109.46501 * 60.00298 * 1 2 3 20 20 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46958 * 300.00396 * 1 2 3 22 22 H 1.07999 * 122.72241 * 179.97438 * 5 4 3 23 23 H 0.96699 * 113.99712 * 59.99989 * 9 7 6 24 24 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 7 1.4352 2.3506 0.0005 5 6 2.1931 3.4323 -0.0001 6 6 3.5047 3.1902 -0.0006 7 6 4.5965 4.2289 -0.0008 8 1 4.2180 5.1541 0.4337 9 8 5.7026 3.7576 0.7715 10 6 5.0454 4.4856 -1.4164 11 1 4.5857 3.9504 -2.2341 12 6 6.0386 5.4083 -1.6681 13 7 6.5981 6.0603 -0.6724 14 14 6.5896 5.7320 -3.4233 15 1 5.8091 4.8765 -4.3529 16 1 6.3626 7.1610 -3.7578 17 1 8.0347 5.4163 -3.5548 18 16 3.7377 1.4440 -0.0082 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.7839 4.4318 -0.0002 23 1 6.0907 2.9356 0.4417 24 1 7.2971 6.7091 -0.8494 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306178527.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:15 Heat of formation + Delta-G solvation = -63.700699 kcal Electronic energy + Delta-G solvation = -12085.478176 eV Core-core repulsion = 9704.626427 eV Total energy + Delta-G solvation = -2380.851748 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08449 -39.06912 -37.53807 -34.33716 -31.74238 -29.03184 -28.05174 -25.72242 -23.89071 -21.27753 -19.78758 -19.14571 -17.86693 -17.23351 -16.71589 -16.64976 -15.98224 -15.21364 -14.86334 -14.63938 -14.30843 -13.44724 -13.04876 -12.89462 -12.83954 -12.34657 -12.21132 -12.04752 -11.66864 -10.92357 -10.77724 -10.43260 -10.13151 -9.29343 -8.17414 -6.45195 -0.11894 -0.06320 0.79861 1.40835 1.43154 1.54827 1.85427 2.38755 2.46502 3.07482 3.45293 4.12135 4.35207 4.38473 4.43580 4.64463 4.69779 5.00424 5.44276 5.62874 5.90178 5.94017 6.61870 6.64143 7.21014 7.37938 8.85541 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.053368 B = 0.008251 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.528477 B = 3392.542087 C = 3541.740767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.289 6.289 3 C 0.190 3.810 4 N -0.540 5.540 5 C 0.034 3.966 6 C -0.239 4.239 7 C 0.301 3.699 8 H 0.055 0.945 9 O -0.569 6.569 10 C -0.575 4.575 11 H 0.056 0.944 12 C 0.032 3.968 13 N -0.894 5.894 14 Si 0.962 3.038 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.276 1.276 18 S 0.208 5.792 19 H 0.056 0.944 20 H 0.137 0.863 21 H 0.057 0.943 22 H 0.183 0.817 23 H 0.356 0.644 24 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 -9.981 -0.124 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.196 6.196 3 C -0.126 4.126 4 N -0.272 5.272 5 C -0.113 4.113 6 C -0.361 4.361 7 C 0.241 3.759 8 H 0.072 0.928 9 O -0.373 6.373 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.172 4.172 13 N -0.530 5.530 14 Si 0.786 3.214 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.201 1.201 18 S 0.459 5.541 19 H 0.074 0.926 20 H 0.155 0.845 21 H 0.076 0.924 22 H 0.200 0.800 23 H 0.201 0.799 24 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.531 -10.286 0.288 12.751 hybrid contribution -0.287 1.011 -1.079 1.507 sum -7.818 -9.274 -0.792 12.156 Atomic orbital electron populations 1.23257 0.75226 1.05457 1.02396 1.86288 1.24620 1.20175 1.88562 1.25320 0.95827 0.88911 1.02515 1.66591 1.39540 0.97415 1.23675 1.21225 0.88625 0.97638 1.03828 1.27268 1.00842 0.97721 1.10247 1.17701 0.79476 0.87744 0.90974 0.92761 1.86578 1.50011 1.44338 1.56354 1.21811 1.21871 1.24887 0.92755 0.92530 1.25853 0.95709 0.94461 1.01159 1.70185 1.25134 1.24897 1.32797 0.85468 0.78199 0.78133 0.79565 1.19160 1.20239 1.20134 1.83521 0.99202 1.00663 1.70691 0.92565 0.84511 0.92373 0.80030 0.79873 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.63 113.37 1.21 1.92 14 2 O -0.29 -8.49 10.56 -88.62 -0.94 -9.42 14 3 C 0.19 6.61 8.13 130.59 1.06 7.67 14 4 N -0.54 -20.17 9.88 -318.84 -3.15 -23.32 14 5 C 0.03 1.33 11.24 83.56 0.94 2.27 14 6 C -0.24 -10.16 5.51 24.59 0.14 -10.03 14 7 C 0.30 15.11 3.28 29.10 0.10 15.21 14 8 H 0.05 2.98 8.14 -2.39 -0.02 2.96 14 9 O -0.57 -28.83 12.66 -148.98 -1.89 -30.71 14 10 C -0.58 -30.68 8.74 25.60 0.22 -30.46 14 11 H 0.06 3.00 7.74 -2.91 -0.02 2.98 14 12 C 0.03 1.71 5.40 84.66 0.46 2.17 14 13 N -0.89 -51.27 12.84 21.45 0.28 -50.99 14 14 Si 0.96 42.20 29.54 68.60 2.03 44.23 14 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 14 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 14 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 14 18 S 0.21 7.37 22.51 -56.49 -1.27 6.10 14 19 H 0.06 1.23 8.14 -2.39 -0.02 1.21 14 20 H 0.14 1.77 8.14 -2.38 -0.02 1.75 14 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 14 22 H 0.18 6.66 8.06 -2.91 -0.02 6.63 14 23 H 0.36 15.94 8.45 -74.06 -0.63 15.31 14 24 H 0.27 14.33 8.31 -92.70 -0.77 13.56 14 Total: -1.00 -62.51 237.36 -0.22 -62.73 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.60 Total: 12.62 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.12 Total: -11.24 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.88 Total: -74.31 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -2.82 Total: -40.13 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.27 Total: 6.10 kcal Total: -62.51 -0.22 -62.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306178527.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.966 kcal (2) G-P(sol) polarization free energy of solvation -62.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds