Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 7 7 C 1.52998 * 109.86979 * 179.55018 * 6 3 2 8 8 C 1.54103 * 109.87668 * 300.71548 * 6 3 2 9 9 C 1.54807 * 104.18794 * 121.45042 * 8 6 3 10 10 C 1.54990 * 102.09365 * 20.88283 * 9 8 6 11 11 H 1.08998 * 110.62229 * 81.47095 * 10 9 8 12 12 C 1.50699 * 110.75309 * 204.41268 * 10 9 8 13 13 H 1.08000 * 120.00208 * 355.59584 * 12 10 9 14 14 C 1.37883 * 119.99819 * 175.60083 * 12 10 9 15 15 N 1.31522 * 119.99583 * 179.97438 * 14 12 10 16 16 Si 1.86790 * 120.00374 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47364 * 89.99787 * 16 14 12 18 18 H 1.48501 * 109.47370 * 210.00424 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00177 * 16 14 12 20 20 O 1.43745 * 109.87700 * 58.54254 * 6 3 2 21 21 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 24 24 H 1.08997 * 109.47039 * 60.00317 * 5 3 2 25 25 H 1.09001 * 109.47285 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47263 * 299.99960 * 5 3 2 27 27 H 1.09001 * 109.46799 * 60.70417 * 7 6 3 28 28 H 1.08999 * 109.46859 * 180.69752 * 7 6 3 29 29 H 1.08992 * 109.47372 * 300.69930 * 7 6 3 30 30 H 1.08996 * 110.48484 * 240.12831 * 8 6 3 31 31 H 1.08998 * 110.48676 * 2.77509 * 8 6 3 32 32 H 1.08994 * 110.90835 * 262.67879 * 9 8 6 33 33 H 1.09005 * 110.93318 * 139.08829 * 9 8 6 34 34 H 0.97000 * 119.99641 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 6 3.9947 2.6549 0.7168 8 6 3.1630 0.7778 2.1707 9 6 4.0517 -0.4858 2.2710 10 6 5.0457 -0.2775 1.1002 11 1 5.8510 0.3951 1.3954 12 6 5.6031 -1.5969 0.6317 13 1 5.3480 -2.5070 1.1543 14 6 6.4389 -1.6422 -0.4640 15 7 6.9258 -2.7937 -0.8724 16 14 6.8797 -0.0683 -1.3682 17 1 8.1047 0.5201 -0.7695 18 1 7.1258 -0.3726 -2.8007 19 1 5.7589 0.8991 -1.2531 20 8 4.2320 0.3249 0.0707 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.2570 1.8013 -1.9563 25 1 2.6615 2.7668 -1.4425 26 1 2.8831 1.0773 -1.9563 27 1 3.3414 3.3545 1.2381 28 1 4.9602 2.6148 1.2211 29 1 4.1356 2.9867 -0.3118 30 1 3.4991 1.5376 2.8762 31 1 2.1182 0.5246 2.3502 32 1 3.4608 -1.3897 2.1234 33 1 4.5766 -0.5180 3.2258 34 1 7.5134 -2.8256 -1.6435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = -93.285995 kcal Electronic energy + Delta-G solvation = -15708.552952 eV Core-core repulsion = 13220.757518 eV Total energy + Delta-G solvation = -2487.795434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32938 -37.02332 -33.11702 -31.87106 -31.07025 -28.84278 -27.15142 -26.30453 -23.95270 -21.91147 -20.10082 -19.24792 -16.81376 -16.36689 -15.49984 -15.29893 -14.66913 -14.12985 -13.71931 -13.11280 -12.98898 -12.63429 -12.59179 -12.44581 -11.85841 -11.75918 -11.49399 -11.09344 -10.85963 -10.72646 -10.65640 -10.14097 -10.09345 -9.70307 -9.58731 -9.23647 -9.13711 -8.45974 -8.16004 -6.01047 -4.07573 3.44142 3.50215 3.75435 4.10364 4.61678 4.76343 5.10261 5.32693 5.37627 5.45651 5.49823 5.55795 5.59494 5.72058 5.83137 5.85479 5.95196 5.99080 6.05095 6.10794 6.30558 6.44526 6.53319 6.62083 6.68266 6.78406 6.84394 7.30177 7.63003 7.72215 8.35377 8.55812 9.01090 9.63367 11.09933 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.012002 C = 0.011634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.370287 B = 2332.448255 C = 2406.072281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.099 3.901 4 H 0.055 0.945 5 C -0.172 4.172 6 C 0.094 3.906 7 C -0.161 4.161 8 C -0.141 4.141 9 C -0.130 4.130 10 C 0.172 3.828 11 H 0.022 0.978 12 C -0.513 4.513 13 H 0.078 0.922 14 C 0.082 3.918 15 N -0.896 5.896 16 Si 0.867 3.133 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.220 1.220 20 O -0.349 6.349 21 H 0.033 0.967 22 H 0.082 0.918 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 10.971 2.841 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.041 3.959 4 H 0.073 0.927 5 C -0.229 4.229 6 C 0.053 3.947 7 C -0.218 4.218 8 C -0.179 4.179 9 C -0.168 4.168 10 C 0.116 3.884 11 H 0.039 0.961 12 C -0.550 4.550 13 H 0.096 0.904 14 C -0.121 4.121 15 N -0.533 5.533 16 Si 0.694 3.306 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.143 1.143 20 O -0.269 6.269 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.221 10.676 2.490 14.988 hybrid contribution 0.066 0.940 -0.370 1.012 sum -10.155 11.616 2.120 15.574 Atomic orbital electron populations 1.22753 0.82781 1.02299 0.98971 1.88165 1.17785 1.27033 1.94788 1.22196 0.93574 0.84447 0.95681 0.92679 1.22259 1.01615 1.01828 0.97240 1.22000 0.89744 0.91005 0.91958 1.22291 1.01045 0.96255 1.02238 1.22893 1.00668 0.98511 0.95805 1.22947 0.97624 0.96889 0.99344 1.21070 0.88883 0.93494 0.84907 0.96086 1.20921 1.27061 0.92112 1.14884 0.90424 1.25034 0.94499 0.96447 0.96167 1.69934 1.32541 1.25232 1.25631 0.87047 0.79558 0.85677 0.78363 1.21378 1.21981 1.14288 1.89347 1.50494 1.54839 1.32262 0.94820 0.89972 0.94753 0.93476 0.91956 0.90506 0.92770 0.91990 0.91982 0.92180 0.91716 0.91004 0.92308 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.48 16 2 O -0.36 -6.66 9.59 -45.02 -0.43 -7.09 16 3 C 0.10 1.66 1.95 -26.73 -0.05 1.61 16 4 H 0.06 0.77 7.79 -51.93 -0.40 0.37 16 5 C -0.17 -2.75 9.04 37.16 0.34 -2.42 16 6 C 0.09 1.77 0.63 -90.04 -0.06 1.71 16 7 C -0.16 -2.58 8.27 37.16 0.31 -2.27 16 8 C -0.14 -2.49 6.05 -25.20 -0.15 -2.64 16 9 C -0.13 -2.74 6.56 -24.73 -0.16 -2.90 16 10 C 0.17 4.27 2.49 -26.83 -0.07 4.20 16 11 H 0.02 0.53 7.68 -51.93 -0.40 0.13 16 12 C -0.51 -15.15 9.42 -34.44 -0.32 -15.48 16 13 H 0.08 2.46 8.03 -52.49 -0.42 2.03 16 14 C 0.08 2.48 5.47 -17.81 -0.10 2.38 16 15 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 16 Si 0.87 22.48 27.10 -169.99 -4.61 17.88 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 19 H -0.22 -5.48 5.37 56.52 0.30 -5.18 16 20 O -0.35 -8.42 6.87 -45.02 -0.31 -8.73 16 21 H 0.03 0.39 8.09 -51.93 -0.42 -0.03 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.41 7.87 -51.93 -0.41 0.00 16 24 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 25 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 26 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.06 0.98 6.42 -51.93 -0.33 0.65 16 30 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 31 H 0.06 1.07 7.37 -51.93 -0.38 0.69 16 32 H 0.07 1.61 8.05 -51.93 -0.42 1.19 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 269.72 15.07 4.06 4.06 Total: -1.00 -32.72 269.72 -5.34 -38.06 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.66 Total: -2.27 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 0.82 Total: -14.32 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.77 Total: -27.59 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.74 Total: -15.83 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.61 Total: 17.88 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.72 -5.34 -38.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.224 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds