Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 7 7 C 1.52998 * 109.86979 * 179.55018 * 6 3 2 8 8 C 1.54103 * 109.87668 * 300.71548 * 6 3 2 9 9 C 1.54807 * 104.18794 * 121.45042 * 8 6 3 10 10 C 1.54990 * 102.09365 * 20.88283 * 9 8 6 11 11 H 1.08998 * 110.62229 * 81.47095 * 10 9 8 12 12 C 1.50699 * 110.75309 * 204.41268 * 10 9 8 13 13 H 1.08000 * 120.00208 * 355.59584 * 12 10 9 14 14 C 1.37883 * 119.99819 * 175.60083 * 12 10 9 15 15 N 1.31522 * 119.99583 * 179.97438 * 14 12 10 16 16 Si 1.86790 * 120.00374 * 359.97438 * 14 12 10 17 17 H 1.48497 * 109.47364 * 89.99787 * 16 14 12 18 18 H 1.48501 * 109.47370 * 210.00424 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00177 * 16 14 12 20 20 O 1.43745 * 109.87700 * 58.54254 * 6 3 2 21 21 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 24 24 H 1.08997 * 109.47039 * 60.00317 * 5 3 2 25 25 H 1.09001 * 109.47285 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47263 * 299.99960 * 5 3 2 27 27 H 1.09001 * 109.46799 * 60.70417 * 7 6 3 28 28 H 1.08999 * 109.46859 * 180.69752 * 7 6 3 29 29 H 1.08992 * 109.47372 * 300.69930 * 7 6 3 30 30 H 1.08996 * 110.48484 * 240.12831 * 8 6 3 31 31 H 1.08998 * 110.48676 * 2.77509 * 8 6 3 32 32 H 1.08994 * 110.90835 * 262.67879 * 9 8 6 33 33 H 1.09005 * 110.93318 * 139.08829 * 9 8 6 34 34 H 0.97000 * 119.99641 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 6 3.9947 2.6549 0.7168 8 6 3.1630 0.7778 2.1707 9 6 4.0517 -0.4858 2.2710 10 6 5.0457 -0.2775 1.1002 11 1 5.8510 0.3951 1.3954 12 6 5.6031 -1.5969 0.6317 13 1 5.3480 -2.5070 1.1543 14 6 6.4389 -1.6422 -0.4640 15 7 6.9258 -2.7937 -0.8724 16 14 6.8797 -0.0683 -1.3682 17 1 8.1047 0.5201 -0.7695 18 1 7.1258 -0.3726 -2.8007 19 1 5.7589 0.8991 -1.2531 20 8 4.2320 0.3249 0.0707 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 1.2570 1.8013 -1.9563 25 1 2.6615 2.7668 -1.4425 26 1 2.8831 1.0773 -1.9563 27 1 3.3414 3.3545 1.2381 28 1 4.9602 2.6148 1.2211 29 1 4.1356 2.9867 -0.3118 30 1 3.4991 1.5376 2.8762 31 1 2.1182 0.5246 2.3502 32 1 3.4608 -1.3897 2.1234 33 1 4.5766 -0.5180 3.2258 34 1 7.5134 -2.8256 -1.6435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = -115.901326 kcal Electronic energy + Delta-G solvation = -15709.533626 eV Core-core repulsion = 13220.757518 eV Total energy + Delta-G solvation = -2488.776108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82090 -38.41253 -35.00732 -33.67688 -32.70246 -30.32764 -28.73305 -27.52164 -25.54687 -23.42024 -21.89821 -20.67726 -18.97874 -17.67332 -17.04521 -16.91793 -16.00435 -15.89605 -15.15011 -14.75719 -14.53542 -14.44084 -13.96823 -13.77313 -13.51648 -13.00244 -12.82578 -12.61869 -12.50803 -12.37777 -12.07582 -11.85705 -11.68857 -11.38144 -11.33569 -11.13994 -10.72020 -10.38920 -9.92454 -8.32922 -6.44316 1.36336 1.40380 1.69930 2.44906 2.94145 2.95926 3.47611 3.84075 4.03520 4.12833 4.21429 4.34550 4.43494 4.52408 4.54315 4.61943 4.66083 4.79451 4.82365 4.88600 4.91815 5.00530 5.06735 5.19323 5.23844 5.35686 5.47572 5.54146 5.60322 6.24437 6.43802 6.55964 6.78437 7.31168 8.81896 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.012002 C = 0.011634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.370287 B = 2332.448255 C = 2406.072281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.095 3.905 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.075 3.925 7 C -0.158 4.158 8 C -0.129 4.129 9 C -0.130 4.130 10 C 0.172 3.828 11 H 0.028 0.972 12 C -0.526 4.526 13 H 0.034 0.966 14 C 0.022 3.978 15 N -0.945 5.945 16 Si 0.935 3.065 17 H -0.275 1.275 18 H -0.297 1.297 19 H -0.203 1.203 20 O -0.378 6.378 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 14.371 3.373 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.038 3.962 4 H 0.111 0.889 5 C -0.226 4.226 6 C 0.035 3.965 7 C -0.215 4.215 8 C -0.166 4.166 9 C -0.168 4.168 10 C 0.116 3.884 11 H 0.045 0.955 12 C -0.563 4.563 13 H 0.052 0.948 14 C -0.176 4.176 15 N -0.585 5.585 16 Si 0.759 3.241 17 H -0.200 1.200 18 H -0.224 1.224 19 H -0.125 1.125 20 O -0.298 6.298 21 H 0.075 0.925 22 H 0.101 0.899 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.731 14.086 3.043 18.582 hybrid contribution 0.426 -0.194 -0.482 0.672 sum -11.305 13.892 2.561 18.093 Atomic orbital electron populations 1.22951 0.80447 1.03120 1.00775 1.88117 1.20564 1.28486 1.95067 1.22334 0.93074 0.84675 0.96115 0.88859 1.22236 1.01926 1.01676 0.96802 1.22502 0.90218 0.91315 0.92426 1.22280 1.01381 0.95032 1.02846 1.22863 1.00635 0.97108 0.95992 1.22860 0.97388 0.97923 0.98627 1.20849 0.90072 0.91194 0.86246 0.95487 1.21243 1.27355 0.93204 1.14474 0.94758 1.25986 0.94516 0.99935 0.97197 1.70078 1.34016 1.27707 1.26687 0.85999 0.79998 0.81666 0.76485 1.20036 1.22360 1.12527 1.89225 1.51451 1.56471 1.32679 0.92523 0.89871 0.93254 0.91468 0.89959 0.94594 0.88814 0.92665 0.92002 0.88992 0.90422 0.93657 0.90708 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.82 113.37 1.23 1.78 16 2 O -0.40 -14.17 9.59 -139.62 -1.34 -15.50 16 3 C 0.10 2.88 1.95 30.59 0.06 2.94 16 4 H 0.09 2.09 7.79 -2.39 -0.02 2.07 16 5 C -0.17 -4.92 9.04 71.98 0.65 -4.27 16 6 C 0.08 2.60 0.63 -10.42 -0.01 2.59 16 7 C -0.16 -4.34 8.27 71.98 0.60 -3.75 16 8 C -0.13 -4.09 6.05 31.58 0.19 -3.90 16 9 C -0.13 -5.38 6.56 31.89 0.21 -5.17 16 10 C 0.17 8.52 2.49 30.53 0.08 8.60 16 11 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 12 C -0.53 -32.24 9.42 25.60 0.24 -31.99 16 13 H 0.03 2.31 8.03 -2.91 -0.02 2.29 16 14 C 0.02 1.38 5.47 84.65 0.46 1.84 16 15 N -0.94 -62.26 13.96 21.45 0.30 -61.96 16 16 Si 0.94 47.24 27.10 68.60 1.86 49.10 16 17 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 19 H -0.20 -9.65 5.37 99.48 0.53 -9.12 16 20 O -0.38 -17.80 6.87 -139.62 -0.96 -18.76 16 21 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.01 7.87 -2.38 -0.02 1.00 16 24 H 0.07 1.63 7.87 -2.39 -0.02 1.62 16 25 H 0.08 2.01 6.44 -2.39 -0.02 2.00 16 26 H 0.03 1.32 7.74 -2.39 -0.02 1.31 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.06 1.69 6.42 -2.39 -0.02 1.68 16 30 H 0.09 2.35 7.70 -2.39 -0.02 2.34 16 31 H 0.08 2.28 7.37 -2.39 -0.02 2.26 16 32 H 0.04 2.07 8.05 -2.39 -0.02 2.05 16 33 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 34 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -74.20 269.72 4.45 -69.75 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.88 Total: 8.70 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.71 Total: -31.33 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.30 Total: -61.96 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -2.30 Total: -34.26 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.86 Total: 49.10 kcal Total: -74.20 4.45 -69.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.150 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds