Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00135 * 2 1 4 4 H 1.08999 * 109.47499 * 30.00106 * 3 2 1 5 5 C 1.53000 * 109.47013 * 269.99600 * 3 2 1 6 6 C 1.53007 * 109.47039 * 149.99795 * 3 2 1 7 7 C 1.52997 * 109.82315 * 179.29697 * 6 3 2 8 8 C 1.54382 * 109.82843 * 300.18547 * 6 3 2 9 9 C 1.55304 * 102.24910 * 140.96012 * 8 6 3 10 10 C 1.54948 * 100.94524 * 325.86398 * 9 8 6 11 11 H 1.08990 * 110.30909 * 277.53062 * 10 9 8 12 12 C 1.50698 * 110.30784 * 155.45873 * 10 9 8 13 13 H 1.07995 * 120.00600 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99941 * 179.97438 * 12 10 9 15 15 N 1.31518 * 119.99947 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00194 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46944 * 90.00294 * 16 14 12 18 18 H 1.48500 * 109.47073 * 210.00154 * 16 14 12 19 19 H 1.48497 * 109.47089 * 330.00061 * 16 14 12 20 20 O 1.43237 * 109.90399 * 58.36437 * 6 3 2 21 21 H 1.08999 * 109.46755 * 60.00338 * 1 2 3 22 22 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47233 * 300.00232 * 1 2 3 24 24 H 1.08997 * 109.46842 * 60.00165 * 5 3 2 25 25 H 1.08995 * 109.46981 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47154 * 300.00117 * 5 3 2 27 27 H 1.09002 * 109.47153 * 180.88617 * 7 6 3 28 28 H 1.09001 * 109.46832 * 60.88808 * 7 6 3 29 29 H 1.09004 * 109.47261 * 300.88789 * 7 6 3 30 30 H 1.09000 * 110.84707 * 259.14787 * 8 6 3 31 31 H 1.08998 * 110.84805 * 22.56635 * 8 6 3 32 32 H 1.09008 * 111.12616 * 83.78837 * 9 8 6 33 33 H 1.09000 * 111.12405 * 207.90326 * 9 8 6 34 34 H 0.96996 * 120.00398 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.3590 1.2632 0.7213 7 6 3.9968 2.6538 0.7108 8 6 3.1596 0.7894 2.1771 9 6 4.3971 -0.1224 2.3992 10 6 4.5705 -0.7326 0.9855 11 1 3.8960 -1.5785 0.8533 12 6 5.9985 -1.1652 0.7741 13 1 6.7267 -1.0265 1.5594 14 6 6.3753 -1.7382 -0.4220 15 7 5.4887 -1.9067 -1.3786 16 14 8.1452 -2.2751 -0.6839 17 1 8.3052 -3.6843 -0.2438 18 1 8.4881 -2.1645 -2.1245 19 1 9.0493 -1.4034 0.1084 20 8 4.2280 0.3251 0.0759 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.2570 1.8013 -1.9563 25 1 2.6616 2.7668 -1.4425 26 1 2.8831 1.0773 -1.9563 27 1 4.9639 2.6138 1.2120 28 1 3.3461 3.3559 1.2321 29 1 4.1348 2.9825 -0.3194 30 1 3.1720 1.6346 2.8652 31 1 2.2337 0.2232 2.2774 32 1 5.2709 0.4638 2.6840 33 1 4.1878 -0.8955 3.1385 34 1 5.7538 -2.3095 -2.2203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = -98.934257 kcal Electronic energy + Delta-G solvation = -15600.584853 eV Core-core repulsion = 13112.544492 eV Total energy + Delta-G solvation = -2488.040361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.04510 -36.74570 -33.06683 -31.65803 -30.82628 -28.56895 -26.72694 -26.04838 -23.88054 -21.91039 -20.15622 -18.91373 -16.41945 -16.13919 -15.71000 -14.74330 -14.46574 -14.40091 -13.42774 -13.02263 -12.69544 -12.50603 -12.11514 -11.91811 -11.70601 -11.59123 -11.26684 -11.11874 -10.84665 -10.65233 -10.49143 -10.14681 -10.06432 -9.86823 -9.58340 -9.01538 -8.92313 -8.45552 -7.70560 -5.88492 -4.01963 3.36332 3.42819 3.46127 4.28238 4.50556 4.96781 5.32419 5.47788 5.52242 5.59957 5.65251 5.68245 5.75351 5.88085 5.94486 6.07898 6.14706 6.17907 6.27134 6.34394 6.48726 6.68294 6.76915 6.83589 6.87994 6.95202 7.03532 7.76275 7.82540 8.01928 8.41885 8.79833 9.17500 9.68191 11.18074 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.010154 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.694748 B = 2756.942067 C = 2930.999458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.088 3.912 4 H 0.048 0.952 5 C -0.169 4.169 6 C 0.100 3.900 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.145 4.145 10 C 0.216 3.784 11 H 0.031 0.969 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.078 3.922 15 N -0.859 5.859 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.338 6.338 21 H 0.033 0.967 22 H 0.080 0.920 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 6.906 3.483 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.029 3.971 4 H 0.066 0.934 5 C -0.226 4.226 6 C 0.059 3.941 7 C -0.204 4.204 8 C -0.183 4.183 9 C -0.183 4.183 10 C 0.161 3.839 11 H 0.049 0.951 12 C -0.571 4.571 13 H 0.078 0.922 14 C -0.128 4.128 15 N -0.495 5.495 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.257 6.257 21 H 0.052 0.948 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.587 6.684 3.082 10.570 hybrid contribution 0.554 -0.030 -0.039 0.556 sum -7.033 6.653 3.043 10.148 Atomic orbital electron populations 1.22723 0.83085 1.02059 0.98855 1.88150 1.17577 1.27421 1.94784 1.22471 0.94554 0.84025 0.96003 0.93383 1.22211 1.01359 1.01800 0.97245 1.21909 0.89119 0.91854 0.91247 1.22069 1.00865 0.95444 1.02052 1.23083 0.99801 0.99371 0.96031 1.23291 0.95834 0.98126 1.01078 1.20454 0.95328 0.86226 0.81919 0.95145 1.21134 0.94773 1.40547 1.00684 0.92206 1.25072 0.96974 0.94678 0.96031 1.70068 1.33323 1.41412 1.04717 0.86692 0.85549 0.78891 0.77359 1.20644 1.21189 1.19864 1.88821 1.63426 1.35345 1.38157 0.94830 0.90184 0.94986 0.93976 0.92172 0.90038 0.91850 0.93280 0.92108 0.92348 0.91347 0.91977 0.92287 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.53 16 2 O -0.36 -7.28 9.38 -45.35 -0.43 -7.70 16 3 C 0.09 1.62 2.07 -26.73 -0.06 1.56 16 4 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 5 C -0.17 -3.00 9.04 37.16 0.34 -2.67 16 6 C 0.10 2.05 0.71 -89.89 -0.06 1.99 16 7 C -0.15 -2.58 8.38 37.16 0.31 -2.27 16 8 C -0.15 -2.77 5.99 -24.79 -0.15 -2.92 16 9 C -0.15 -3.18 6.53 -24.48 -0.16 -3.34 16 10 C 0.22 5.83 3.22 -26.86 -0.09 5.74 16 11 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.53 -15.49 8.80 -34.44 -0.30 -15.79 16 13 H 0.06 1.68 7.76 -52.49 -0.41 1.27 16 14 C 0.08 2.29 5.43 -17.82 -0.10 2.19 16 15 N -0.86 -26.34 13.05 55.43 0.72 -25.61 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 O -0.34 -8.95 9.34 -45.35 -0.42 -9.37 16 21 H 0.03 0.44 7.87 -51.93 -0.41 0.03 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.04 0.65 7.87 -51.93 -0.41 0.24 16 25 H 0.06 0.95 6.42 -51.93 -0.33 0.61 16 26 H 0.08 1.76 7.75 -51.93 -0.40 1.36 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 30 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 31 H 0.07 1.29 7.24 -51.93 -0.38 0.91 16 32 H 0.06 1.34 8.04 -51.92 -0.42 0.92 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 275.68 15.07 4.15 4.15 Total: -1.00 -32.06 275.68 -5.73 -37.79 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.57 Total: -2.20 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.83 Total: -13.96 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.72 Total: -25.61 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.85 Total: -17.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.06 -5.73 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.142 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds