Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00135 * 2 1 4 4 H 1.08999 * 109.47499 * 30.00106 * 3 2 1 5 5 C 1.53000 * 109.47013 * 269.99600 * 3 2 1 6 6 C 1.53007 * 109.47039 * 149.99795 * 3 2 1 7 7 C 1.52997 * 109.82315 * 179.29697 * 6 3 2 8 8 C 1.54382 * 109.82843 * 300.18547 * 6 3 2 9 9 C 1.55304 * 102.24910 * 140.96012 * 8 6 3 10 10 C 1.54948 * 100.94524 * 325.86398 * 9 8 6 11 11 H 1.08990 * 110.30909 * 277.53062 * 10 9 8 12 12 C 1.50698 * 110.30784 * 155.45873 * 10 9 8 13 13 H 1.07995 * 120.00600 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99941 * 179.97438 * 12 10 9 15 15 N 1.31518 * 119.99947 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00194 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46944 * 90.00294 * 16 14 12 18 18 H 1.48500 * 109.47073 * 210.00154 * 16 14 12 19 19 H 1.48497 * 109.47089 * 330.00061 * 16 14 12 20 20 O 1.43237 * 109.90399 * 58.36437 * 6 3 2 21 21 H 1.08999 * 109.46755 * 60.00338 * 1 2 3 22 22 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47233 * 300.00232 * 1 2 3 24 24 H 1.08997 * 109.46842 * 60.00165 * 5 3 2 25 25 H 1.08995 * 109.46981 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47154 * 300.00117 * 5 3 2 27 27 H 1.09002 * 109.47153 * 180.88617 * 7 6 3 28 28 H 1.09001 * 109.46832 * 60.88808 * 7 6 3 29 29 H 1.09004 * 109.47261 * 300.88789 * 7 6 3 30 30 H 1.09000 * 110.84707 * 259.14787 * 8 6 3 31 31 H 1.08998 * 110.84805 * 22.56635 * 8 6 3 32 32 H 1.09008 * 111.12616 * 83.78837 * 9 8 6 33 33 H 1.09000 * 111.12405 * 207.90326 * 9 8 6 34 34 H 0.96996 * 120.00398 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.3590 1.2632 0.7213 7 6 3.9968 2.6538 0.7108 8 6 3.1596 0.7894 2.1771 9 6 4.3971 -0.1224 2.3992 10 6 4.5705 -0.7326 0.9855 11 1 3.8960 -1.5785 0.8533 12 6 5.9985 -1.1652 0.7741 13 1 6.7267 -1.0265 1.5594 14 6 6.3753 -1.7382 -0.4220 15 7 5.4887 -1.9067 -1.3786 16 14 8.1452 -2.2751 -0.6839 17 1 8.3052 -3.6843 -0.2438 18 1 8.4881 -2.1645 -2.1245 19 1 9.0493 -1.4034 0.1084 20 8 4.2280 0.3251 0.0759 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.2570 1.8013 -1.9563 25 1 2.6616 2.7668 -1.4425 26 1 2.8831 1.0773 -1.9563 27 1 4.9639 2.6138 1.2120 28 1 3.3461 3.3559 1.2321 29 1 4.1348 2.9825 -0.3194 30 1 3.1720 1.6346 2.8652 31 1 2.2337 0.2232 2.2774 32 1 5.2709 0.4638 2.6840 33 1 4.1878 -0.8955 3.1385 34 1 5.7538 -2.3095 -2.2203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = -120.513686 kcal Electronic energy + Delta-G solvation = -15601.520607 eV Core-core repulsion = 13112.544492 eV Total energy + Delta-G solvation = -2488.976115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65736 -38.28893 -35.00267 -33.48709 -32.58053 -30.16057 -28.35156 -27.49827 -25.57304 -23.59335 -21.96981 -20.48969 -18.57017 -17.56776 -17.31800 -16.57175 -16.07220 -15.97372 -15.18904 -14.61277 -14.09658 -13.99625 -13.81460 -13.66196 -13.47035 -13.03028 -12.80465 -12.63300 -12.53478 -12.36716 -12.12212 -12.07576 -11.79577 -11.34551 -11.28731 -10.87858 -10.67840 -10.38273 -9.64062 -8.09301 -6.31294 1.39687 1.41708 1.52370 2.42478 2.99448 3.08328 3.57796 3.90406 4.04587 4.20105 4.23912 4.36777 4.50765 4.54362 4.61765 4.70923 4.72339 4.82675 4.86099 4.90888 4.92805 5.02737 5.17481 5.20183 5.30399 5.40097 5.55351 5.64933 5.83536 6.26048 6.51383 6.70284 7.19107 7.45328 8.97885 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.010154 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.694748 B = 2756.942067 C = 2930.999458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.086 3.914 4 H 0.088 0.912 5 C -0.162 4.162 6 C 0.079 3.921 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.139 4.139 10 C 0.212 3.788 11 H -0.019 1.019 12 C -0.556 4.556 13 H 0.063 0.937 14 C 0.021 3.979 15 N -0.901 5.901 16 Si 0.960 3.040 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.264 1.264 20 O -0.373 6.373 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 8.586 4.618 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.325 6.325 3 C 0.028 3.972 4 H 0.106 0.894 5 C -0.220 4.220 6 C 0.038 3.962 7 C -0.199 4.199 8 C -0.170 4.170 9 C -0.177 4.177 10 C 0.156 3.844 11 H -0.001 1.001 12 C -0.593 4.593 13 H 0.081 0.919 14 C -0.181 4.181 15 N -0.538 5.538 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.188 1.188 20 O -0.293 6.293 21 H 0.066 0.934 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.993 8.374 4.235 12.327 hybrid contribution 0.577 -0.536 -0.381 0.874 sum -7.416 7.839 3.853 11.458 Atomic orbital electron populations 1.22943 0.80542 1.03067 1.00705 1.88107 1.20590 1.28772 1.95056 1.22535 0.94106 0.84331 0.96191 0.89449 1.22147 1.01468 1.01398 0.96969 1.22429 0.89704 0.92012 0.92041 1.22037 1.01029 0.94430 1.02391 1.23044 0.98132 0.99939 0.95896 1.23161 0.97627 0.98829 0.98068 1.20209 0.93239 0.85824 0.85127 1.00091 1.21574 0.96007 1.40798 1.00950 0.91898 1.25983 1.01664 0.94707 0.95698 1.70235 1.35704 1.42668 1.05220 0.85549 0.79819 0.78865 0.77297 1.19552 1.20928 1.18789 1.88718 1.65103 1.36055 1.39463 0.93419 0.89827 0.92478 0.91779 0.90149 0.95086 0.93000 0.88997 0.92490 0.88460 0.91284 0.91630 0.91315 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 10.82 113.37 1.23 1.88 16 2 O -0.41 -16.19 9.38 -139.31 -1.31 -17.49 16 3 C 0.09 3.02 2.07 30.60 0.06 3.08 16 4 H 0.09 2.37 7.79 -2.39 -0.02 2.35 16 5 C -0.16 -5.62 9.04 71.98 0.65 -4.97 16 6 C 0.08 3.12 0.71 -10.32 -0.01 3.12 16 7 C -0.14 -4.61 8.38 71.98 0.60 -4.00 16 8 C -0.13 -4.76 5.99 31.85 0.19 -4.57 16 9 C -0.14 -6.01 6.53 32.05 0.21 -5.80 16 10 C 0.21 11.82 3.22 30.51 0.10 11.92 16 11 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 12 C -0.56 -33.09 8.80 25.60 0.23 -32.86 16 13 H 0.06 3.58 7.76 -2.91 -0.02 3.56 16 14 C 0.02 1.27 5.43 84.65 0.46 1.73 16 15 N -0.90 -57.47 13.05 21.45 0.28 -57.19 16 16 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 20 O -0.37 -20.30 9.34 -139.31 -1.30 -21.60 16 21 H 0.05 1.15 7.87 -2.39 -0.02 1.14 16 22 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 23 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 24 H 0.06 1.87 7.87 -2.39 -0.02 1.86 16 25 H 0.08 2.38 6.42 -2.39 -0.02 2.37 16 26 H 0.03 1.36 7.75 -2.39 -0.02 1.34 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.87 6.40 -2.38 -0.02 1.85 16 30 H 0.10 2.73 7.82 -2.39 -0.02 2.71 16 31 H 0.07 2.46 7.24 -2.39 -0.02 2.44 16 32 H 0.06 2.76 8.04 -2.38 -0.02 2.74 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.91 275.68 4.47 -68.45 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.05 Total: 10.45 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.72 Total: -30.49 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -2.61 Total: -39.09 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.91 4.47 -68.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.067 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds