Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00054 * 2 1 4 4 H 1.08998 * 109.47064 * 30.00804 * 3 2 1 5 5 C 1.52997 * 109.47503 * 270.00102 * 3 2 1 6 6 C 1.53006 * 109.47000 * 149.99938 * 3 2 1 7 7 C 1.53000 * 109.82221 * 65.88755 * 6 3 2 8 8 C 1.54378 * 109.82952 * 305.00262 * 6 3 2 9 9 C 1.55305 * 102.25275 * 219.12528 * 8 6 3 10 10 C 1.54944 * 100.93876 * 34.13724 * 9 8 6 11 11 H 1.08996 * 110.31167 * 82.46795 * 10 9 8 12 12 C 1.50703 * 110.30999 * 204.53898 * 10 9 8 13 13 H 1.08007 * 119.99546 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00568 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00594 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 119.99757 * 0.02562 * 14 12 10 17 17 H 1.48499 * 109.47419 * 89.99734 * 16 14 12 18 18 H 1.48499 * 109.47332 * 209.99954 * 16 14 12 19 19 H 1.48501 * 109.47085 * 329.99717 * 16 14 12 20 20 O 1.43238 * 109.82998 * 186.86920 * 6 3 2 21 21 H 1.09004 * 109.47007 * 59.99598 * 1 2 3 22 22 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 299.99876 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 25 25 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 26 26 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 27 27 H 1.09002 * 109.46686 * 59.29744 * 7 6 3 28 28 H 1.08995 * 109.47255 * 179.30281 * 7 6 3 29 29 H 1.09003 * 109.46844 * 299.30008 * 7 6 3 30 30 H 1.09004 * 110.85029 * 337.32042 * 8 6 3 31 31 H 1.09003 * 110.85299 * 100.73534 * 8 6 3 32 32 H 1.09004 * 111.12643 * 152.05229 * 9 8 6 33 33 H 1.08996 * 111.13070 * 276.17178 * 9 8 6 34 34 H 0.97003 * 120.00679 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3590 1.2632 0.7213 7 6 4.3459 0.4062 -0.0739 8 6 3.1774 0.6753 2.1372 9 6 4.1349 1.5564 2.9851 10 6 4.0000 2.9190 2.2599 11 1 3.1111 3.4459 2.6068 12 6 5.2292 3.7593 2.4927 13 1 6.0389 3.3761 3.0961 14 6 5.3206 5.0168 1.9347 15 7 6.3934 5.7498 2.1374 16 14 3.9204 5.6792 0.8906 17 1 2.9573 6.4051 1.7570 18 1 4.4628 6.6082 -0.1331 19 1 3.2280 4.5509 0.2177 20 8 3.8739 2.5918 0.8670 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2569 1.8015 -1.9563 25 1 2.8829 1.0775 -1.9563 26 1 2.6615 2.7670 -1.4424 27 1 4.4721 0.8281 -1.0709 28 1 5.3079 0.3901 0.4384 29 1 3.9608 -0.6103 -0.1555 30 1 2.1468 0.7868 2.4744 31 1 3.4817 -0.3710 2.1649 32 1 3.7936 1.6257 4.0180 33 1 5.1581 1.1841 2.9362 34 1 6.4576 6.6347 1.7451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = -96.733721 kcal Electronic energy + Delta-G solvation = -15573.987317 eV Core-core repulsion = 13086.042378 eV Total energy + Delta-G solvation = -2487.944939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39598 -37.26509 -33.10189 -31.86673 -31.20512 -28.92857 -26.82555 -26.60873 -24.12138 -21.97165 -20.26848 -19.13676 -16.84803 -16.33655 -16.03774 -14.98000 -14.84914 -14.49633 -13.56725 -13.25939 -13.13128 -12.57039 -12.44513 -12.25854 -12.00799 -11.77582 -11.41296 -11.31498 -10.93742 -10.75950 -10.68323 -10.22162 -10.09239 -9.80290 -9.60583 -9.40254 -9.27812 -8.55480 -8.20557 -6.09418 -4.17126 3.37558 3.42883 3.66264 3.86815 4.53251 4.84807 5.08520 5.26322 5.34946 5.39177 5.44132 5.53957 5.63380 5.66171 5.67976 5.92566 6.02420 6.10938 6.16105 6.21436 6.32018 6.46923 6.53348 6.55190 6.65598 6.72017 6.90348 7.20855 7.43644 7.64503 8.36295 8.45918 8.93172 9.55015 11.01332 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036824 B = 0.011117 C = 0.009836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.193823 B = 2518.080985 C = 2846.064467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.058 0.942 5 C -0.170 4.170 6 C 0.103 3.897 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.136 4.136 10 C 0.172 3.828 11 H 0.025 0.975 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.083 3.917 15 N -0.893 5.893 16 Si 0.870 3.130 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.227 1.227 20 O -0.365 6.365 21 H 0.036 0.964 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -9.803 -4.152 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.076 0.924 5 C -0.227 4.227 6 C 0.063 3.937 7 C -0.201 4.201 8 C -0.175 4.175 9 C -0.174 4.174 10 C 0.117 3.883 11 H 0.043 0.957 12 C -0.557 4.557 13 H 0.096 0.904 14 C -0.121 4.121 15 N -0.530 5.530 16 Si 0.696 3.304 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.150 1.150 20 O -0.285 6.285 21 H 0.055 0.945 22 H 0.099 0.901 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.269 -9.674 -4.357 14.766 hybrid contribution -0.913 0.650 -0.387 1.186 sum -11.183 -9.024 -4.744 15.133 Atomic orbital electron populations 1.22725 0.82009 1.02055 0.99669 1.87864 1.18750 1.28302 1.95111 1.22462 0.95174 0.83567 0.96222 0.92417 1.22275 1.01200 1.02820 0.96442 1.21800 0.90845 0.86790 0.94265 1.22020 0.99198 0.98480 1.00355 1.23015 0.99678 0.99807 0.94987 1.23144 0.99164 0.96488 0.98606 1.20969 0.96761 0.92364 0.78245 0.95738 1.21044 1.03313 0.98734 1.32567 0.90417 1.25050 0.95814 0.96545 0.94671 1.69922 1.27998 1.10951 1.44160 0.86968 0.83002 0.79574 0.80812 1.21149 1.21736 1.14988 1.88857 1.83898 1.26641 1.29129 0.94502 0.90074 0.94357 0.93603 0.91646 0.90657 0.92403 0.92259 0.92311 0.92032 0.91162 0.91689 0.91017 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.38 -5.84 9.47 -35.23 -0.33 -6.18 16 3 C 0.08 1.42 2.08 -26.73 -0.06 1.36 16 4 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 5 C -0.17 -2.72 8.93 37.16 0.33 -2.39 16 6 C 0.10 1.98 0.76 -89.89 -0.07 1.91 16 7 C -0.14 -2.52 8.13 37.16 0.30 -2.21 16 8 C -0.14 -2.43 5.63 -24.79 -0.14 -2.57 16 9 C -0.14 -2.75 6.53 -24.48 -0.16 -2.91 16 10 C 0.17 4.15 2.67 -26.86 -0.07 4.08 16 11 H 0.03 0.60 7.49 -51.93 -0.39 0.21 16 12 C -0.52 -14.89 9.38 -34.44 -0.32 -15.22 16 13 H 0.08 2.38 8.00 -52.48 -0.42 1.96 16 14 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 15 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 16 Si 0.87 22.02 27.04 -169.99 -4.60 17.42 16 17 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.23 -5.54 5.53 56.52 0.31 -5.22 16 20 O -0.36 -8.56 7.32 -35.23 -0.26 -8.82 16 21 H 0.04 0.39 7.87 -51.93 -0.41 -0.01 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 25 H 0.06 1.00 6.35 -51.93 -0.33 0.67 16 26 H 0.07 1.34 7.90 -51.93 -0.41 0.93 16 27 H 0.06 1.00 6.33 -51.93 -0.33 0.67 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 30 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -30.87 269.95 -5.19 -36.05 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.65 Total: -1.59 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 0.81 Total: -14.13 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.59 Total: -15.00 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.60 Total: 17.42 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.87 -5.19 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.680 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds