Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00054 * 2 1 4 4 H 1.08998 * 109.47064 * 30.00804 * 3 2 1 5 5 C 1.52997 * 109.47503 * 270.00102 * 3 2 1 6 6 C 1.53006 * 109.47000 * 149.99938 * 3 2 1 7 7 C 1.53000 * 109.82221 * 65.88755 * 6 3 2 8 8 C 1.54378 * 109.82952 * 305.00262 * 6 3 2 9 9 C 1.55305 * 102.25275 * 219.12528 * 8 6 3 10 10 C 1.54944 * 100.93876 * 34.13724 * 9 8 6 11 11 H 1.08996 * 110.31167 * 82.46795 * 10 9 8 12 12 C 1.50703 * 110.30999 * 204.53898 * 10 9 8 13 13 H 1.08007 * 119.99546 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00568 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00594 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 119.99757 * 0.02562 * 14 12 10 17 17 H 1.48499 * 109.47419 * 89.99734 * 16 14 12 18 18 H 1.48499 * 109.47332 * 209.99954 * 16 14 12 19 19 H 1.48501 * 109.47085 * 329.99717 * 16 14 12 20 20 O 1.43238 * 109.82998 * 186.86920 * 6 3 2 21 21 H 1.09004 * 109.47007 * 59.99598 * 1 2 3 22 22 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 299.99876 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 25 25 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 26 26 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 27 27 H 1.09002 * 109.46686 * 59.29744 * 7 6 3 28 28 H 1.08995 * 109.47255 * 179.30281 * 7 6 3 29 29 H 1.09003 * 109.46844 * 299.30008 * 7 6 3 30 30 H 1.09004 * 110.85029 * 337.32042 * 8 6 3 31 31 H 1.09003 * 110.85299 * 100.73534 * 8 6 3 32 32 H 1.09004 * 111.12643 * 152.05229 * 9 8 6 33 33 H 1.08996 * 111.13070 * 276.17178 * 9 8 6 34 34 H 0.97003 * 120.00679 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3590 1.2632 0.7213 7 6 4.3459 0.4062 -0.0739 8 6 3.1774 0.6753 2.1372 9 6 4.1349 1.5564 2.9851 10 6 4.0000 2.9190 2.2599 11 1 3.1111 3.4459 2.6068 12 6 5.2292 3.7593 2.4927 13 1 6.0389 3.3761 3.0961 14 6 5.3206 5.0168 1.9347 15 7 6.3934 5.7498 2.1374 16 14 3.9204 5.6792 0.8906 17 1 2.9573 6.4051 1.7570 18 1 4.4628 6.6082 -0.1331 19 1 3.2280 4.5509 0.2177 20 8 3.8739 2.5918 0.8670 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2569 1.8015 -1.9563 25 1 2.8829 1.0775 -1.9563 26 1 2.6615 2.7670 -1.4424 27 1 4.4721 0.8281 -1.0709 28 1 5.3079 0.3901 0.4384 29 1 3.9608 -0.6103 -0.1555 30 1 2.1468 0.7868 2.4744 31 1 3.4817 -0.3710 2.1649 32 1 3.7936 1.6257 4.0180 33 1 5.1581 1.1841 2.9362 34 1 6.4576 6.6347 1.7451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = -117.341657 kcal Electronic energy + Delta-G solvation = -15574.880944 eV Core-core repulsion = 13086.042378 eV Total energy + Delta-G solvation = -2488.838566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89822 -38.58107 -35.00902 -33.59705 -32.83097 -30.45250 -28.55565 -27.58001 -25.71228 -23.52072 -22.02726 -20.60810 -18.96577 -17.66921 -17.44181 -16.60486 -16.30600 -15.95262 -15.09897 -14.70604 -14.63328 -14.52278 -14.00457 -13.63823 -13.46373 -13.11009 -12.84335 -12.75623 -12.61592 -12.40487 -12.10043 -11.92218 -11.64677 -11.50453 -11.30544 -11.24681 -10.75330 -10.52463 -9.96494 -8.34630 -6.47001 1.35784 1.38863 1.66438 2.41866 2.60203 3.04318 3.51925 3.78039 3.88214 4.10749 4.20735 4.26368 4.41161 4.54288 4.56257 4.58788 4.70245 4.80668 4.83988 4.87469 4.91184 4.97224 5.05643 5.17695 5.20748 5.28485 5.46529 5.51000 5.56174 6.21338 6.27916 6.52542 6.76973 7.29694 8.79764 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036824 B = 0.011117 C = 0.009836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.193823 B = 2518.080985 C = 2846.064467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.090 3.910 4 H 0.054 0.946 5 C -0.168 4.168 6 C 0.088 3.912 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.134 4.134 10 C 0.171 3.829 11 H 0.028 0.972 12 C -0.530 4.530 13 H 0.039 0.961 14 C 0.026 3.974 15 N -0.941 5.941 16 Si 0.935 3.065 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.213 1.213 20 O -0.386 6.386 21 H 0.046 0.954 22 H 0.104 0.896 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 -11.292 -5.076 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.309 6.309 3 C 0.032 3.968 4 H 0.073 0.927 5 C -0.225 4.225 6 C 0.048 3.952 7 C -0.196 4.196 8 C -0.161 4.161 9 C -0.172 4.172 10 C 0.115 3.885 11 H 0.045 0.955 12 C -0.567 4.567 13 H 0.058 0.942 14 C -0.173 4.173 15 N -0.581 5.581 16 Si 0.758 3.242 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.135 1.135 20 O -0.307 6.307 21 H 0.065 0.935 22 H 0.122 0.878 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.884 -11.189 -5.276 17.861 hybrid contribution -0.085 1.006 -0.071 1.012 sum -12.969 -10.183 -5.346 17.334 Atomic orbital electron populations 1.22986 0.79897 1.03895 1.00431 1.87835 1.20934 1.26899 1.95194 1.22212 0.93835 0.84511 0.96220 0.92750 1.22238 1.02420 1.01534 0.96345 1.22137 0.92451 0.84885 0.95729 1.21990 0.98295 0.99467 0.99877 1.22972 0.99747 1.00186 0.93226 1.23071 0.99448 0.94924 0.99711 1.20791 0.94457 0.93729 0.79480 0.95470 1.21344 1.03955 0.99646 1.31739 0.94249 1.25952 0.98338 0.96970 0.96087 1.70056 1.30314 1.11609 1.46073 0.85962 0.79946 0.79136 0.79125 1.20019 1.21889 1.13495 1.88735 1.84714 1.29327 1.27969 0.93532 0.87756 0.93828 0.91308 0.91247 0.92851 0.92465 0.93718 0.90067 0.90464 0.89123 0.90051 0.92350 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.68 16 2 O -0.39 -10.38 9.47 -148.98 -1.41 -11.79 16 3 C 0.09 2.78 2.08 30.60 0.06 2.85 16 4 H 0.05 1.71 7.79 -2.39 -0.02 1.69 16 5 C -0.17 -4.91 8.93 71.98 0.64 -4.27 16 6 C 0.09 3.15 0.76 -10.32 -0.01 3.14 16 7 C -0.14 -4.61 8.13 71.98 0.59 -4.02 16 8 C -0.12 -4.02 5.63 31.85 0.18 -3.84 16 9 C -0.13 -5.26 6.53 32.05 0.21 -5.05 16 10 C 0.17 8.19 2.67 30.51 0.08 8.27 16 11 H 0.03 1.30 7.49 -2.39 -0.02 1.28 16 12 C -0.53 -31.15 9.38 25.60 0.24 -30.91 16 13 H 0.04 2.53 8.00 -2.91 -0.02 2.51 16 14 C 0.03 1.55 5.47 84.65 0.46 2.01 16 15 N -0.94 -60.01 13.96 21.44 0.30 -59.71 16 16 Si 0.93 45.84 27.04 68.60 1.85 47.70 16 17 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 19 H -0.21 -9.87 5.53 99.48 0.55 -9.31 16 20 O -0.39 -17.70 7.32 -148.98 -1.09 -18.79 16 21 H 0.05 0.81 7.87 -2.38 -0.02 0.79 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 0.79 8.09 -2.38 -0.02 0.78 16 24 H 0.07 1.66 7.87 -2.39 -0.02 1.64 16 25 H 0.07 1.94 6.35 -2.39 -0.02 1.93 16 26 H 0.05 1.79 7.90 -2.38 -0.02 1.77 16 27 H 0.06 1.87 6.33 -2.39 -0.02 1.86 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 2.31 7.89 -2.39 -0.02 2.29 16 30 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 31 H 0.09 2.59 7.82 -2.39 -0.02 2.57 16 32 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 34 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -67.17 269.95 4.23 -62.94 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.89 Total: 9.79 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 3.68 Total: -30.14 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.30 Total: -59.71 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -2.50 Total: -30.58 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.85 Total: 47.70 kcal Total: -67.17 4.23 -62.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.398 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds