Wall clock time and date at job start Mon Mar 30 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00688 * 2 1 4 4 C 1.53000 * 109.46580 * 58.12449 * 3 2 1 5 5 H 1.09000 * 109.47891 * 298.82725 * 4 3 2 6 6 O 1.42900 * 109.47048 * 178.82813 * 4 3 2 7 7 C 1.50704 * 109.47091 * 58.83039 * 4 3 2 8 8 H 1.07991 * 119.99929 * 5.00276 * 7 4 3 9 9 C 1.37881 * 119.99622 * 184.72837 * 7 4 3 10 10 N 1.31505 * 120.00438 * 359.97438 * 9 7 4 11 11 Si 1.86803 * 119.99481 * 179.97438 * 9 7 4 12 12 H 1.48504 * 109.47175 * 89.99945 * 11 9 7 13 13 H 1.48501 * 109.47228 * 210.00219 * 11 9 7 14 14 H 1.48503 * 109.47345 * 330.00322 * 11 9 7 15 15 C 1.52995 * 109.47591 * 178.12740 * 3 2 1 16 16 C 1.52999 * 109.47122 * 59.99946 * 15 3 2 17 17 C 1.53002 * 109.46675 * 60.00276 * 16 15 3 18 18 C 1.52995 * 109.47121 * 299.99725 * 17 16 15 19 19 C 1.52999 * 109.46994 * 298.13350 * 3 2 1 20 20 H 1.08994 * 109.47162 * 177.65274 * 1 2 3 21 21 H 1.08996 * 109.46942 * 297.65225 * 1 2 3 22 22 H 1.09002 * 109.46832 * 57.64940 * 1 2 3 23 23 H 0.96701 * 113.99979 * 300.00189 * 6 4 3 24 24 H 0.97004 * 120.00585 * 179.97438 * 10 9 7 25 25 H 1.09007 * 109.46811 * 180.02562 * 15 3 2 26 26 H 1.09002 * 109.47375 * 300.00110 * 15 3 2 27 27 H 1.08991 * 109.47500 * 300.00321 * 16 15 3 28 28 H 1.09002 * 109.47224 * 179.97438 * 16 15 3 29 29 H 1.09005 * 109.46643 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.47611 * 60.00016 * 17 16 15 31 31 H 1.09000 * 109.47456 * 300.00179 * 18 17 16 32 32 H 1.09002 * 109.47375 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47591 * 59.99281 * 19 3 2 34 34 H 1.09001 * 109.47313 * 179.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.5219 2.0811 1.2250 5 1 0.4378 2.1851 1.1808 6 8 2.1245 3.3767 1.2397 7 6 1.9044 1.3350 2.4773 8 1 2.5112 0.4441 2.4111 9 6 1.4842 1.7931 3.7081 10 7 0.7502 2.8812 3.7892 11 14 1.9576 0.8678 5.2603 12 1 3.2441 1.3977 5.7795 13 1 0.8986 1.0468 6.2857 14 1 2.1067 -0.5767 4.9496 15 6 3.5348 1.1848 0.0471 16 6 4.0232 0.4091 -1.1779 17 6 3.6094 1.1517 -2.4499 18 6 2.0850 1.2723 -2.4971 19 6 1.5965 2.0480 -1.2721 20 1 -0.3633 -1.0267 -0.0421 21 1 -0.3633 0.4769 0.9103 22 1 -0.3633 0.5499 -0.8682 23 1 3.0906 3.3608 1.2786 24 1 0.4543 3.2033 4.6551 25 1 3.9782 2.1807 0.0476 26 1 3.8297 0.6558 0.9534 27 1 3.5798 -0.5866 -1.1779 28 1 5.1094 0.3236 -1.1445 29 1 3.9578 0.5993 -3.3227 30 1 4.0528 2.1475 -2.4500 31 1 1.6415 0.2766 -2.4971 32 1 1.7901 1.8009 -3.4036 33 1 0.5104 2.1339 -1.3057 34 1 2.0396 3.0439 -1.2719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306260823.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:31 Heat of formation + Delta-G solvation = -115.661920 kcal Electronic energy + Delta-G solvation = -15842.680936 eV Core-core repulsion = 13353.915209 eV Total energy + Delta-G solvation = -2488.765727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30519 -35.22140 -35.04509 -32.11568 -30.37747 -29.55831 -26.56607 -25.72109 -23.21779 -21.98496 -20.26604 -18.70570 -16.86985 -15.53108 -15.43056 -14.72708 -14.58032 -14.28263 -13.57510 -13.36232 -12.86299 -12.47068 -12.17023 -11.94015 -11.68369 -11.46664 -11.22642 -10.89792 -10.84862 -10.66606 -10.39241 -10.11341 -10.06559 -9.98095 -9.83077 -8.98753 -8.58578 -8.49431 -7.78877 -5.97813 -4.12463 3.30086 3.37247 3.41656 4.42060 4.68297 5.23801 5.27858 5.30579 5.33960 5.76805 5.83114 5.95109 5.98874 6.07130 6.09171 6.13659 6.15825 6.24256 6.36301 6.44548 6.48905 6.62276 6.71339 6.77215 6.82299 6.94819 7.03869 7.67252 7.90824 8.13338 8.26422 8.92330 9.35633 9.61382 11.07314 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.010497 C = 0.010431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.836787 B = 2666.697081 C = 2683.702557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.096 3.904 4 C 0.209 3.791 5 H 0.059 0.941 6 O -0.566 6.566 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.076 3.924 10 N -0.868 5.868 11 Si 0.887 3.113 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.099 4.099 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.141 4.141 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.028 0.972 23 H 0.344 0.656 24 H 0.259 0.741 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -3.348 -9.256 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.057 3.943 4 C 0.152 3.848 5 H 0.077 0.923 6 O -0.369 6.369 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.129 4.129 10 N -0.504 5.504 11 Si 0.714 3.286 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.136 4.136 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.179 4.179 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.189 0.811 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.421 -3.203 -9.170 10.010 hybrid contribution 0.456 -0.443 0.990 1.177 sum 2.877 -3.646 -8.180 9.406 Atomic orbital electron populations 1.22603 0.82880 1.00860 1.00217 1.87803 1.18446 1.27581 1.94908 1.22212 0.93328 0.83699 0.95084 1.19936 0.94223 0.80548 0.90130 0.92332 1.86578 1.21931 1.31628 1.96796 1.21610 1.34595 1.11546 0.91191 0.91961 1.25057 0.94284 0.94468 0.99104 1.70059 1.34527 1.21405 1.24458 0.86698 0.78197 0.80508 0.83158 1.20630 1.21299 1.19749 1.21436 0.93652 1.00214 0.98309 1.21490 0.99206 0.99967 0.94675 1.21501 0.96134 1.00063 0.97554 1.21448 0.95761 1.00601 0.97306 1.22083 1.00640 0.99865 0.95287 0.91330 0.92766 0.95307 0.81145 0.93109 0.91562 0.90379 0.91581 0.93061 0.93039 0.92562 0.91965 0.93252 0.92502 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.19 101.05 1.03 1.62 16 2 O -0.37 -7.70 8.58 -35.23 -0.30 -8.00 16 3 C 0.10 1.97 0.20 -90.62 -0.02 1.95 16 4 C 0.21 5.20 1.60 -27.88 -0.04 5.16 16 5 H 0.06 1.63 6.64 -51.93 -0.34 1.28 16 6 O -0.57 -14.29 12.32 -35.23 -0.43 -14.72 16 7 C -0.55 -14.94 7.72 -34.44 -0.27 -15.21 16 8 H 0.06 1.70 6.60 -52.49 -0.35 1.35 16 9 C 0.08 2.12 5.42 -17.82 -0.10 2.02 16 10 N -0.87 -25.65 13.04 55.43 0.72 -24.93 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.10 -1.84 4.38 -26.73 -0.12 -1.96 16 16 C -0.12 -1.82 5.78 -26.73 -0.15 -1.98 16 17 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 18 C -0.11 -1.74 5.78 -26.73 -0.15 -1.90 16 19 C -0.14 -2.56 4.28 -26.73 -0.11 -2.67 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.05 1.15 6.54 -51.93 -0.34 0.81 16 22 H 0.03 0.49 6.34 -51.93 -0.33 0.16 16 23 H 0.34 7.71 7.29 45.56 0.33 8.04 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 26 H 0.08 1.59 6.60 -51.93 -0.34 1.25 16 27 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.04 6.53 -51.93 -0.34 0.71 16 34 H 0.07 1.32 7.71 -51.93 -0.40 0.92 16 LS Contribution 261.44 15.07 3.94 3.94 Total: -1.00 -29.92 261.44 -5.70 -35.62 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.51 Total: 6.46 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.09 Total: -14.76 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.72 Total: -24.93 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.74 Total: -22.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.92 -5.70 -35.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306260823.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.042 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds