Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47532 * 2 1 4 4 C 1.50700 * 109.46853 * 119.99976 * 2 1 3 5 5 H 1.08003 * 120.00120 * 120.00087 * 4 2 1 6 6 C 1.37879 * 120.00093 * 299.99645 * 4 2 1 7 7 N 1.31509 * 119.99583 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46901 * 60.00368 * 8 6 4 10 10 H 1.48500 * 109.47187 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47408 * 300.00301 * 8 6 4 12 12 N 1.46898 * 109.47120 * 239.99573 * 2 1 3 13 13 C 1.46904 * 111.00405 * 304.35770 * 12 2 1 14 14 C 1.46903 * 111.00063 * 68.31202 * 12 2 1 15 15 H 1.08996 * 110.62257 * 300.37648 * 14 12 2 16 16 C 1.54318 * 110.70772 * 177.27179 * 14 12 2 17 17 N 1.47440 * 107.23182 * 219.33815 * 16 14 12 18 18 C 1.47844 * 108.56918 * 359.00371 * 17 16 14 19 19 C 1.55114 * 104.90415 * 23.97950 * 18 17 16 20 20 H 1.09006 * 110.92490 * 81.16650 * 19 18 17 21 21 O 1.42902 * 111.15058 * 205.04850 * 19 18 17 22 22 H 1.08995 * 109.47095 * 299.64095 * 1 2 3 23 23 H 1.09000 * 109.46842 * 59.64008 * 1 2 3 24 24 H 1.09000 * 109.47310 * 179.63829 * 1 2 3 25 25 H 0.97002 * 119.99931 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47038 * 191.52610 * 13 12 2 27 27 H 1.09008 * 109.46485 * 311.52223 * 13 12 2 28 28 H 1.08999 * 109.46951 * 71.52256 * 13 12 2 29 29 H 1.09001 * 109.88751 * 338.73972 * 16 14 12 30 30 H 1.08995 * 109.88920 * 99.92232 * 16 14 12 31 31 H 1.00905 * 110.99699 * 236.74429 * 17 16 14 32 32 H 1.08998 * 110.37553 * 142.92745 * 18 17 16 33 33 H 1.09001 * 110.37456 * 265.16275 * 18 17 16 34 34 H 0.96694 * 113.99632 * 292.24709 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0083 10 1 1.8258 -0.4205 5.2205 11 1 1.8256 -2.5202 4.0079 12 7 2.0197 -0.6926 -1.1994 13 6 1.4655 -2.0503 -1.2865 14 6 1.7173 0.0783 -2.4128 15 1 0.6423 0.2262 -2.5157 16 6 2.2939 -0.6213 -3.6616 17 7 2.8263 0.4318 -4.5455 18 6 2.5833 1.7454 -3.9121 19 6 2.4595 1.4406 -2.3963 20 1 3.4433 1.3438 -1.9370 21 8 1.6825 2.4388 -1.7314 22 1 -0.3633 0.5082 0.8931 23 1 -0.3633 0.5194 -0.8868 24 1 -0.3634 -1.0276 -0.0065 25 1 0.7088 1.1614 3.4843 26 1 1.9936 -2.6094 -2.0589 27 1 1.5854 -2.5539 -0.3272 28 1 0.4063 -1.9949 -1.5380 29 1 3.0951 -1.3002 -3.3695 30 1 1.5061 -1.1729 -4.1745 31 1 2.4001 0.3866 -5.4591 32 1 3.4214 2.4171 -4.0977 33 1 1.6577 2.1821 -4.2871 34 1 2.1055 3.3076 -1.6961 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306272049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = -32.251757 kcal Electronic energy + Delta-G solvation = -15485.527005 eV Core-core repulsion = 13032.670965 eV Total energy + Delta-G solvation = -2452.856040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08880 -36.02960 -35.12312 -32.53640 -29.14379 -28.17933 -27.28229 -25.10388 -24.40588 -21.07428 -20.74364 -18.68630 -17.29261 -16.19480 -15.80395 -15.40148 -14.63372 -13.92082 -13.62067 -13.36734 -12.82520 -12.61879 -12.30056 -12.23892 -11.90345 -11.47310 -11.16624 -10.99438 -10.72930 -10.56793 -10.50416 -10.04338 -9.94673 -9.65494 -9.58925 -8.74329 -8.34968 -8.27448 -7.13093 -5.91989 -3.95847 3.36297 3.40371 3.43376 4.20659 4.44661 4.66983 4.97050 4.98316 5.31066 5.38913 5.46371 5.54982 5.87388 5.94762 6.08273 6.18046 6.27588 6.37983 6.48365 6.76473 6.90311 6.96991 6.99688 7.30597 7.41004 7.61000 7.80362 7.91255 8.07744 8.28758 8.47847 8.68582 9.10248 9.67939 11.14443 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043706 B = 0.009234 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.494367 B = 3031.667887 C = 3297.891731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.209 3.791 3 H 0.058 0.942 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.525 5.525 13 C 0.033 3.967 14 C 0.070 3.930 15 H 0.047 0.953 16 C 0.053 3.947 17 N -0.678 5.678 18 C 0.014 3.986 19 C 0.105 3.895 20 H 0.081 0.919 21 O -0.546 6.546 22 H 0.086 0.914 23 H 0.007 0.993 24 H 0.022 0.978 25 H 0.259 0.741 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.012 0.988 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.335 0.665 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 0.670 -10.894 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 H 0.075 0.925 4 C -0.540 4.540 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.531 5.531 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.249 5.249 13 C -0.116 4.116 14 C -0.041 4.041 15 H 0.065 0.935 16 C -0.076 4.076 17 N -0.308 5.308 18 C -0.117 4.117 19 C 0.045 3.955 20 H 0.098 0.902 21 O -0.350 6.350 22 H 0.104 0.896 23 H 0.026 0.974 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.030 0.970 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.045 0.180 -10.410 10.610 hybrid contribution -1.292 0.192 0.566 1.423 sum 0.753 0.372 -9.844 9.880 Atomic orbital electron populations 1.22314 1.01044 0.98490 1.00577 1.19394 0.89740 0.95435 0.85094 0.92453 1.21124 1.30553 1.12410 0.89920 0.92211 1.24917 0.95358 0.95182 0.98846 1.69906 1.36964 1.22993 1.23232 0.86628 0.79189 0.79601 0.82334 1.20301 1.21459 1.20478 1.62478 1.58757 1.01905 1.01762 1.22246 0.95798 0.91556 1.01969 1.22705 0.97275 0.92103 0.91987 0.93512 1.22679 0.98568 0.94354 0.92015 1.61811 1.60966 1.02715 1.05262 1.23537 1.00065 0.92059 0.95989 1.22889 0.95309 0.88126 0.89212 0.90150 1.86678 1.47253 1.21876 1.79157 0.89557 0.97385 0.95861 0.93118 0.93801 0.90380 0.96956 0.89320 0.93451 0.85000 0.90476 0.93534 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.28 37.16 0.31 -3.92 16 2 C 0.21 5.40 2.07 -68.87 -0.14 5.26 16 3 H 0.06 1.62 5.92 -51.93 -0.31 1.32 16 4 C -0.50 -14.01 7.79 -34.44 -0.27 -14.27 16 5 H 0.06 1.67 7.08 -52.48 -0.37 1.29 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.95 11.32 55.43 0.63 -25.33 16 8 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 N -0.52 -11.54 4.54 -226.11 -1.03 -12.57 16 13 C 0.03 0.66 8.15 60.07 0.49 1.15 16 14 C 0.07 1.32 2.10 -65.89 -0.14 1.18 16 15 H 0.05 0.97 6.62 -51.93 -0.34 0.63 16 16 C 0.05 0.82 6.26 -2.84 -0.02 0.81 16 17 N -0.68 -9.35 7.39 -110.67 -0.82 -10.17 16 18 C 0.01 0.19 7.32 -2.19 -0.02 0.17 16 19 C 0.10 1.84 3.34 -24.48 -0.08 1.75 16 20 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 21 O -0.55 -9.97 11.91 -35.23 -0.42 -10.39 16 22 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 23 H 0.01 0.18 6.66 -51.93 -0.35 -0.17 16 24 H 0.02 0.57 6.58 -51.93 -0.34 0.22 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.04 0.75 7.07 -51.93 -0.37 0.38 16 27 H 0.08 1.69 6.50 -51.92 -0.34 1.35 16 28 H 0.01 0.24 6.90 -51.93 -0.36 -0.12 16 29 H 0.09 1.46 7.47 -51.93 -0.39 1.07 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.33 3.79 8.91 -39.29 -0.35 3.44 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.37 4.92 9.12 45.56 0.42 5.33 16 LS Contribution 262.40 15.07 3.95 3.95 Total: -1.00 -30.58 262.40 -6.90 -37.48 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.24 Total: 6.68 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.04 Total: -6.34 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.22 Total: -48.06 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.42 Total: -10.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.58 -6.90 -37.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306272049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.233 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds