Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48502 * 109.46958 * 269.99290 * 3 2 1 5 5 H 1.48495 * 109.47451 * 29.99679 * 3 2 1 6 6 H 1.48504 * 109.47231 * 149.99886 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46947 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46762 * 178.99365 * 10 9 7 12 12 C 1.47683 * 111.00041 * 203.91202 * 11 10 9 13 13 C 1.50778 * 108.09801 * 151.98275 * 12 11 10 14 14 N 1.47747 * 111.91133 * 94.61692 * 13 12 11 15 15 C 1.48070 * 113.78390 * 318.87697 * 14 13 12 16 16 C 1.50742 * 112.94404 * 318.28629 * 15 14 13 17 17 H 1.09005 * 109.64346 * 332.75444 * 16 15 14 18 18 O 1.42904 * 109.55930 * 212.48864 * 16 15 14 19 19 C 1.40091 * 110.99675 * 75.27257 * 11 10 9 20 20 H 0.96996 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46707 * 60.00031 * 9 7 2 22 22 H 1.09000 * 109.47041 * 300.00044 * 9 7 2 23 23 H 1.08997 * 109.47010 * 58.99701 * 10 9 7 24 24 H 1.08996 * 109.47047 * 298.99305 * 10 9 7 25 25 H 1.09001 * 109.73811 * 271.63338 * 12 11 10 26 26 H 1.09003 * 109.73415 * 32.33379 * 12 11 10 27 27 H 1.09002 * 108.99684 * 215.24747 * 13 12 11 28 28 H 1.09002 * 108.99244 * 333.99191 * 13 12 11 29 29 H 1.00902 * 110.99884 * 192.81496 * 14 13 12 30 30 H 1.09004 * 108.78934 * 197.39249 * 15 14 13 31 31 H 1.09001 * 108.79081 * 79.18254 * 15 14 13 32 32 H 0.96709 * 113.99543 * 60.53847 * 18 16 15 33 33 H 1.08994 * 109.07346 * 67.62813 * 19 11 10 34 34 H 1.08995 * 109.01667 * 308.62769 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5111 -4.9341 0.0249 12 6 2.3455 -6.0163 0.5850 13 6 1.4302 -7.0337 1.2178 14 7 1.1087 -8.1383 0.2907 15 6 0.8493 -7.6957 -1.0983 16 6 0.0155 -6.4419 -1.1695 17 1 -0.6183 -6.3727 -0.2853 18 8 -0.8010 -6.4763 -2.3418 19 6 0.9554 -5.2170 -1.2296 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8838 -3.5942 0.8814 24 1 2.8601 -3.6145 -0.8983 25 1 2.9229 -6.4857 -0.2114 26 1 3.0197 -5.6088 1.3383 27 1 1.9143 -7.4439 2.1041 28 1 0.5050 -6.5410 1.5169 29 1 0.3434 -8.6941 0.6420 30 1 0.3301 -8.4933 -1.6297 31 1 1.8034 -7.5113 -1.5920 32 1 -1.4168 -7.2215 -2.3705 33 1 1.7589 -5.4190 -1.9378 34 1 0.3895 -4.3502 -1.5709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306299013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -40.609951 kcal Electronic energy + Delta-G solvation = -14895.646058 eV Core-core repulsion = 12442.427580 eV Total energy + Delta-G solvation = -2453.218478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54629 -36.47616 -35.06868 -32.94549 -30.70249 -29.94857 -26.54504 -25.74428 -23.85734 -21.17132 -20.20650 -20.05201 -17.22780 -16.54103 -16.30795 -15.55505 -15.30095 -14.47195 -14.27583 -13.77617 -13.28193 -12.99746 -12.54967 -12.37284 -12.20031 -11.70600 -11.40883 -11.19272 -10.99249 -10.91214 -10.54425 -10.34927 -10.17932 -9.81673 -9.39832 -9.11849 -8.34694 -8.31678 -7.70035 -5.98118 -4.00944 3.33124 3.39168 3.42253 3.92207 4.13612 4.47711 4.81065 4.83686 4.95755 5.25659 5.31339 5.37715 5.46367 5.62786 5.67893 5.87540 6.03324 6.12645 6.15569 6.22488 6.39468 6.50437 6.88457 6.97919 7.27496 7.46973 7.66310 7.73699 7.80729 7.97747 8.09799 8.44027 9.06487 9.62695 11.13234 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048306 B = 0.006669 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.503423 B = 4197.719642 C = 4546.465604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.071 3.929 11 N -0.557 5.557 12 C 0.055 3.945 13 C 0.059 3.941 14 N -0.695 5.695 15 C 0.029 3.971 16 C 0.076 3.924 17 H 0.061 0.939 18 O -0.562 6.562 19 C 0.085 3.915 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.024 0.976 23 H 0.063 0.937 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.339 0.661 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.374 0.626 33 H 0.020 0.980 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -15.061 -0.058 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.055 4.055 11 N -0.282 5.282 12 C -0.072 4.072 13 C -0.070 4.070 14 N -0.327 5.327 15 C -0.100 4.100 16 C 0.015 3.985 17 H 0.079 0.921 18 O -0.366 6.366 19 C -0.045 4.045 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.220 0.780 33 H 0.038 0.962 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.260 -14.460 -0.048 14.515 hybrid contribution -0.142 0.693 -0.304 0.770 sum 1.117 -13.767 -0.353 13.817 Atomic orbital electron populations 1.69978 1.06041 1.26573 1.50574 1.24998 0.94826 0.99193 0.95292 0.86590 0.79814 0.83481 0.78072 1.20698 1.21206 1.19892 1.21188 0.92972 0.91061 1.50979 0.92775 1.19102 0.93978 0.90053 0.97798 1.22354 0.96425 0.87458 0.99221 1.58952 1.38140 1.04190 1.26923 1.21947 0.94412 0.91708 0.99169 1.21825 0.99691 0.90777 0.94709 1.60542 1.45990 1.24238 1.01963 1.22592 1.00757 0.96185 0.90491 1.22346 0.92384 0.96026 0.87783 0.92070 1.86536 1.54542 1.52547 1.42963 1.20749 0.96133 0.97670 0.89943 0.92996 0.96582 0.95751 0.91862 0.95799 0.93825 0.90019 0.90749 0.93209 0.84412 0.91201 0.90838 0.77981 0.96208 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.75 5.03 -27.88 -0.14 0.60 16 10 C 0.07 1.51 4.97 -3.82 -0.02 1.49 16 11 N -0.56 -10.20 3.92 -239.70 -0.94 -11.14 16 12 C 0.06 0.82 5.37 -4.51 -0.02 0.80 16 13 C 0.06 0.76 6.10 -4.47 -0.03 0.73 16 14 N -0.70 -8.07 6.94 -114.71 -0.80 -8.87 16 15 C 0.03 0.36 5.74 -4.31 -0.02 0.33 16 16 C 0.08 1.10 3.22 -27.07 -0.09 1.02 16 17 H 0.06 0.93 7.20 -51.93 -0.37 0.56 16 18 O -0.56 -7.94 13.27 -35.23 -0.47 -8.41 16 19 C 0.08 1.54 4.46 -6.55 -0.03 1.51 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.29 7.44 -51.93 -0.39 0.91 16 24 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 25 H 0.04 0.66 6.77 -51.93 -0.35 0.31 16 26 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.71 7.20 -51.93 -0.37 0.33 16 29 H 0.34 3.23 8.91 -39.29 -0.35 2.88 16 30 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.07 1.01 6.52 -51.93 -0.34 0.67 16 32 H 0.37 3.31 8.94 45.56 0.41 3.72 16 33 H 0.02 0.36 7.59 -51.93 -0.39 -0.03 16 34 H 0.09 1.93 6.45 -51.93 -0.34 1.59 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -31.55 267.13 -7.67 -39.22 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.44 Total: 2.07 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.76 Total: -7.22 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.00 Total: -46.51 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.47 Total: -8.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.55 -7.67 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306299013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.389 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds