Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48502 * 109.46958 * 269.99290 * 3 2 1 5 5 H 1.48495 * 109.47451 * 29.99679 * 3 2 1 6 6 H 1.48504 * 109.47231 * 149.99886 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46947 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46762 * 178.99365 * 10 9 7 12 12 C 1.47683 * 111.00041 * 203.91202 * 11 10 9 13 13 C 1.50778 * 108.09801 * 151.98275 * 12 11 10 14 14 N 1.47747 * 111.91133 * 94.61692 * 13 12 11 15 15 C 1.48070 * 113.78390 * 318.87697 * 14 13 12 16 16 C 1.50742 * 112.94404 * 318.28629 * 15 14 13 17 17 H 1.09005 * 109.64346 * 332.75444 * 16 15 14 18 18 O 1.42904 * 109.55930 * 212.48864 * 16 15 14 19 19 C 1.40091 * 110.99675 * 75.27257 * 11 10 9 20 20 H 0.96996 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46707 * 60.00031 * 9 7 2 22 22 H 1.09000 * 109.47041 * 300.00044 * 9 7 2 23 23 H 1.08997 * 109.47010 * 58.99701 * 10 9 7 24 24 H 1.08996 * 109.47047 * 298.99305 * 10 9 7 25 25 H 1.09001 * 109.73811 * 271.63338 * 12 11 10 26 26 H 1.09003 * 109.73415 * 32.33379 * 12 11 10 27 27 H 1.09002 * 108.99684 * 215.24747 * 13 12 11 28 28 H 1.09002 * 108.99244 * 333.99191 * 13 12 11 29 29 H 1.00902 * 110.99884 * 192.81496 * 14 13 12 30 30 H 1.09004 * 108.78934 * 197.39249 * 15 14 13 31 31 H 1.09001 * 108.79081 * 79.18254 * 15 14 13 32 32 H 0.96709 * 113.99543 * 60.53847 * 18 16 15 33 33 H 1.08994 * 109.07346 * 67.62813 * 19 11 10 34 34 H 1.08995 * 109.01667 * 308.62769 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5111 -4.9341 0.0249 12 6 2.3455 -6.0163 0.5850 13 6 1.4302 -7.0337 1.2178 14 7 1.1087 -8.1383 0.2907 15 6 0.8493 -7.6957 -1.0983 16 6 0.0155 -6.4419 -1.1695 17 1 -0.6183 -6.3727 -0.2853 18 8 -0.8010 -6.4763 -2.3418 19 6 0.9554 -5.2170 -1.2296 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8838 -3.5942 0.8814 24 1 2.8601 -3.6145 -0.8983 25 1 2.9229 -6.4857 -0.2114 26 1 3.0197 -5.6088 1.3383 27 1 1.9143 -7.4439 2.1041 28 1 0.5050 -6.5410 1.5169 29 1 0.3434 -8.6941 0.6420 30 1 0.3301 -8.4933 -1.6297 31 1 1.8034 -7.5113 -1.5920 32 1 -1.4168 -7.2215 -2.3705 33 1 1.7589 -5.4190 -1.9378 34 1 0.3895 -4.3502 -1.5709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306299013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -67.782507 kcal Electronic energy + Delta-G solvation = -14896.824348 eV Core-core repulsion = 12442.427580 eV Total energy + Delta-G solvation = -2454.396769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82030 -37.77324 -36.31992 -35.00165 -31.91271 -31.82241 -28.12274 -26.93504 -25.70093 -22.77718 -21.66678 -21.31648 -18.72615 -18.24660 -17.46892 -16.89021 -16.66335 -16.43373 -15.80012 -15.13172 -14.56973 -14.37523 -14.16671 -14.02134 -13.58608 -13.23763 -12.90877 -12.84416 -12.65889 -12.34791 -12.18056 -11.84434 -11.66229 -11.36720 -11.28765 -11.20623 -10.56000 -9.33883 -9.19922 -8.21318 -6.33575 1.39507 1.41513 1.52675 2.38596 2.70435 3.09871 3.12003 3.60653 3.72255 3.80850 4.11821 4.16052 4.24940 4.42188 4.51336 4.52962 4.60040 4.73457 4.81504 4.96170 5.03617 5.10612 5.14788 5.42741 5.62354 5.75225 5.87997 6.08619 6.26361 6.45758 6.47456 6.83316 6.84668 7.35937 8.91067 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048306 B = 0.006669 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.503423 B = 4197.719642 C = 4546.465604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.086 3.914 11 N -0.564 5.564 12 C 0.056 3.944 13 C 0.063 3.937 14 N -0.689 5.689 15 C 0.038 3.962 16 C 0.088 3.912 17 H 0.055 0.945 18 O -0.580 6.580 19 C 0.084 3.916 20 H 0.264 0.736 21 H -0.017 1.017 22 H -0.007 1.007 23 H 0.075 0.925 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.355 0.645 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.398 0.602 33 H 0.018 0.982 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -16.211 0.337 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.000 4.000 10 C -0.041 4.041 11 N -0.289 5.289 12 C -0.070 4.070 13 C -0.065 4.065 14 N -0.322 5.322 15 C -0.092 4.092 16 C 0.027 3.973 17 H 0.073 0.927 18 O -0.388 6.388 19 C -0.046 4.046 20 H 0.072 0.928 21 H 0.002 0.998 22 H 0.011 0.989 23 H 0.093 0.907 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.174 0.826 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.036 0.964 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.361 -15.661 0.352 15.842 hybrid contribution -0.548 1.008 -0.450 1.233 sum 1.813 -14.654 -0.099 14.766 Atomic orbital electron populations 1.70126 1.07978 1.27818 1.51409 1.26017 0.95754 1.03526 0.94543 0.85386 0.78702 0.78104 0.78467 1.19879 1.20658 1.18402 1.21638 0.93628 0.92177 1.50979 0.91876 1.18914 0.94211 0.92205 0.94656 1.22007 0.95020 0.87452 0.99579 1.58865 1.38711 1.04236 1.27126 1.22058 0.94634 0.90996 0.99347 1.21753 0.98714 0.90606 0.95473 1.60543 1.46758 1.23470 1.01435 1.22475 0.99816 0.95686 0.91195 1.22118 0.92019 0.95460 0.87672 0.92720 1.86483 1.55285 1.54390 1.42597 1.20708 0.96400 0.97743 0.89744 0.92757 0.99842 0.98851 0.90653 0.96057 0.93466 0.89070 0.88364 0.94658 0.82615 0.88151 0.92092 0.75144 0.96433 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.29 21.45 0.28 -58.22 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.04 2.09 5.03 29.85 0.15 2.24 16 10 C 0.09 3.74 4.97 86.30 0.43 4.16 16 11 N -0.56 -20.92 3.92 -912.27 -3.58 -24.49 16 12 C 0.06 1.59 5.37 85.43 0.46 2.05 16 13 C 0.06 1.49 6.10 85.42 0.52 2.01 16 14 N -0.69 -13.92 6.94 -516.83 -3.59 -17.51 16 15 C 0.04 0.84 5.74 85.34 0.49 1.33 16 16 C 0.09 2.52 3.22 30.38 0.10 2.62 16 17 H 0.05 1.63 7.20 -2.38 -0.02 1.62 16 18 O -0.58 -15.90 13.27 -148.98 -1.98 -17.88 16 19 C 0.08 3.13 4.46 88.05 0.39 3.52 16 20 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 21 H -0.02 -1.03 6.74 -2.39 -0.02 -1.04 16 22 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H 0.08 3.06 7.44 -2.39 -0.02 3.05 16 24 H 0.02 0.93 7.98 -2.39 -0.02 0.91 16 25 H 0.05 1.33 6.77 -2.39 -0.02 1.32 16 26 H 0.09 2.42 7.42 -2.39 -0.02 2.40 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 0.95 7.20 -2.39 -0.02 0.93 16 29 H 0.36 5.53 8.91 -89.69 -0.80 4.73 16 30 H 0.10 1.64 7.86 -2.38 -0.02 1.62 16 31 H 0.06 1.54 6.52 -2.39 -0.02 1.52 16 32 H 0.40 6.26 8.94 -74.05 -0.66 5.60 16 33 H 0.02 0.65 7.59 -2.39 -0.02 0.64 16 34 H 0.05 2.13 6.45 -2.39 -0.02 2.11 16 Total: -1.00 -69.73 267.13 -3.96 -73.68 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.36 Total: 10.71 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.23 Total: -13.27 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -6.88 Total: -100.22 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.98 Total: -17.88 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.73 -3.96 -73.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306299013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.901 kcal (2) G-P(sol) polarization free energy of solvation -69.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds