Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.52145 * 2 1 4 4 C 1.53239 * 109.49083 * 239.92811 * 2 1 3 5 5 N 1.47089 * 108.52129 * 186.21214 * 4 2 1 6 6 C 1.36930 * 120.88154 * 231.18769 * 5 4 2 7 7 H 1.08001 * 119.99918 * 30.81177 * 6 5 4 8 8 C 1.38806 * 120.00202 * 210.80216 * 6 5 4 9 9 N 1.31626 * 119.99745 * 12.07774 * 8 6 5 10 10 Si 1.86792 * 120.00546 * 192.07585 * 8 6 5 11 11 H 1.48503 * 109.47767 * 180.02562 * 10 8 6 12 12 H 1.48504 * 109.47177 * 300.00539 * 10 8 6 13 13 H 1.48507 * 109.47200 * 60.00037 * 10 8 6 14 14 C 1.47083 * 118.23322 * 51.46385 * 5 4 2 15 15 C 1.53697 * 108.27645 * 308.48008 * 14 5 4 16 16 N 1.46904 * 109.25726 * 54.08495 * 15 14 5 17 17 C 1.46898 * 111.00249 * 172.60458 * 16 15 14 18 18 C 1.52999 * 109.46825 * 49.76677 * 17 16 15 19 19 O 1.42897 * 109.47321 * 66.22629 * 18 17 16 20 20 H 1.09004 * 109.47727 * 190.44679 * 1 2 3 21 21 H 1.09011 * 109.47101 * 310.44802 * 1 2 3 22 22 H 1.09007 * 109.46874 * 70.44009 * 1 2 3 23 23 H 1.09000 * 109.62642 * 66.50968 * 4 2 1 24 24 H 1.08993 * 109.79361 * 306.02036 * 4 2 1 25 25 H 0.97003 * 119.99998 * 179.97438 * 9 8 6 26 26 H 1.08999 * 109.62693 * 68.25123 * 14 5 4 27 27 H 1.09004 * 109.62260 * 188.83470 * 14 5 4 28 28 H 1.09000 * 109.64889 * 294.08255 * 15 14 5 29 29 H 1.08999 * 109.44335 * 173.96480 * 15 14 5 30 30 H 1.08998 * 109.47070 * 169.76263 * 17 16 15 31 31 H 1.08999 * 109.47174 * 289.76745 * 17 16 15 32 32 H 1.08996 * 109.47425 * 186.22999 * 18 17 16 33 33 H 1.09003 * 109.47444 * 306.22797 * 18 17 16 34 34 H 0.96698 * 114.00143 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2501 5 7 3.5042 -0.8434 -1.1553 6 6 4.3104 -0.4430 -2.1872 7 1 4.0039 0.3710 -2.8274 8 6 5.5217 -1.0831 -2.4103 9 7 5.7911 -2.2149 -1.7945 10 14 6.7694 -0.3387 -3.5842 11 1 7.9706 -1.2095 -3.6476 12 1 6.1691 -0.2249 -4.9377 13 1 7.1601 1.0102 -3.1012 14 6 4.0778 -1.4101 0.0748 15 6 3.4866 -0.6538 1.2752 16 7 2.0201 -0.6939 1.1985 17 6 1.4139 -0.1359 2.4147 18 6 2.0489 1.2211 2.7246 19 8 1.7043 2.1538 1.6983 20 1 -0.3635 -1.0106 0.1863 21 1 -0.3634 0.6668 0.7821 22 1 -0.3633 0.3441 -0.9684 23 1 1.7776 -0.1504 -2.1388 24 1 1.5959 -1.7168 -1.3097 25 1 6.6374 -2.6624 -1.9507 26 1 3.8241 -2.4679 0.1435 27 1 5.1611 -1.2904 0.0625 28 1 3.8235 0.3827 1.2574 29 1 3.8156 -1.1274 2.2001 30 1 0.3423 -0.0090 2.2612 31 1 1.5834 -0.8156 3.2498 32 1 1.6805 1.5841 3.6840 33 1 3.1327 1.1136 2.7688 34 1 2.0733 3.0378 1.8301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306382629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -15.069218 kcal Electronic energy + Delta-G solvation = -15563.182390 eV Core-core repulsion = 13111.071441 eV Total energy + Delta-G solvation = -2452.110949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.85315 -36.24256 -34.18159 -31.91721 -30.98597 -28.75466 -26.30444 -25.46470 -23.28611 -21.54620 -20.74624 -18.54387 -17.33806 -16.53955 -15.66410 -14.80899 -14.60826 -14.02023 -13.77002 -13.41871 -13.22883 -12.66905 -12.40392 -11.92870 -11.48238 -11.36568 -11.11081 -10.94353 -10.88107 -10.61416 -10.41508 -10.23135 -9.97955 -9.67172 -9.62953 -9.31718 -8.43100 -7.55644 -6.49227 -5.70307 -3.15799 3.41891 3.46744 3.48149 4.34669 4.54805 4.66745 5.28341 5.41883 5.45379 5.49471 5.56115 5.77186 5.82719 6.03379 6.05903 6.21926 6.29277 6.37741 6.50490 6.57568 6.62173 6.77915 6.86700 7.16293 7.41861 7.72784 7.75502 7.80202 7.87134 7.95761 8.54647 9.30569 9.92888 10.54468 11.38143 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.009063 C = 0.008900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.324951 B = 3088.650696 C = 3145.245528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 H 0.063 0.937 4 C 0.153 3.847 5 N -0.595 5.595 6 C -0.249 4.249 7 H 0.062 0.938 8 C 0.002 3.998 9 N -0.906 5.906 10 Si 0.904 3.096 11 H -0.291 1.291 12 H -0.283 1.283 13 H -0.285 1.285 14 C 0.181 3.819 15 C 0.032 3.968 16 N -0.524 5.524 17 C 0.046 3.954 18 C 0.037 3.963 19 O -0.560 6.560 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 5.936 8.460 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.044 4.044 3 H 0.081 0.919 4 C 0.027 3.973 5 N -0.318 5.318 6 C -0.379 4.379 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.551 5.551 10 Si 0.734 3.266 11 H -0.216 1.216 12 H -0.209 1.209 13 H -0.211 1.211 14 C 0.055 3.945 15 C -0.097 4.097 16 N -0.248 5.248 17 C -0.083 4.083 18 C -0.042 4.042 19 O -0.365 6.365 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.383 4.795 8.133 11.985 hybrid contribution 1.292 1.640 -0.144 2.092 sum -6.091 6.435 7.990 11.931 Atomic orbital electron populations 1.21822 0.96052 1.01034 1.00777 1.22269 0.93545 0.97458 0.91141 0.91874 1.21066 0.85788 0.96772 0.93719 1.44066 0.99557 1.73650 1.14504 1.19138 1.00095 1.10876 1.07818 0.91993 1.25140 1.00124 0.95415 0.98975 1.69987 1.23800 1.15652 1.45630 0.86355 0.80934 0.78308 0.81028 1.21642 1.20911 1.21135 1.20912 0.98002 0.93739 0.81875 1.23001 0.86793 0.99279 1.00611 1.62193 1.07415 1.53998 1.01184 1.22433 1.00198 0.91170 0.94484 1.23048 0.99616 0.91715 0.89862 1.86644 1.77400 1.23573 1.48855 0.92797 0.93146 0.92931 0.93070 0.96157 0.93648 0.95696 0.89779 0.95354 0.92652 0.90148 0.90260 0.94518 0.93216 0.78579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.40 37.16 0.31 -1.94 16 2 C 0.07 1.28 2.03 -67.59 -0.14 1.14 16 3 H 0.06 1.34 5.85 -51.93 -0.30 1.04 16 4 C 0.15 3.53 5.95 -3.60 -0.02 3.51 16 5 N -0.59 -15.86 3.02 -171.73 -0.52 -16.38 16 6 C -0.25 -7.13 9.61 -15.06 -0.14 -7.27 16 7 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 8 C 0.00 0.05 5.03 -17.43 -0.09 -0.04 16 9 N -0.91 -26.98 11.14 55.49 0.62 -26.37 16 10 Si 0.90 22.20 29.57 -169.99 -5.03 17.17 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.18 4.56 5.39 -3.36 -0.02 4.55 16 15 C 0.03 0.66 4.66 -3.46 -0.02 0.65 16 16 N -0.52 -9.92 4.67 -226.05 -1.06 -10.98 16 17 C 0.05 0.69 5.76 -3.83 -0.02 0.67 16 18 C 0.04 0.50 6.68 37.16 0.25 0.75 16 19 O -0.56 -8.06 10.78 -35.23 -0.38 -8.44 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.76 6.61 -51.92 -0.34 0.42 16 22 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 23 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 2.32 6.27 -51.93 -0.33 1.99 16 28 H 0.03 0.60 6.54 -51.93 -0.34 0.26 16 29 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.08 1.16 5.65 -51.93 -0.29 0.87 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.71 6.09 -51.93 -0.32 0.40 16 34 H 0.37 3.77 9.12 45.56 0.42 4.18 16 LS Contribution 261.20 15.07 3.94 3.94 Total: -1.00 -31.50 261.20 -6.74 -38.23 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.42 Total: 0.82 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.11 Total: 2.01 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.96 Total: -53.72 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.38 Total: -8.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.50 -6.74 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306382629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.163 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds