Wall clock time and date at job start Mon Mar 30 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.52145 * 2 1 4 4 C 1.53239 * 109.49083 * 239.92811 * 2 1 3 5 5 N 1.47089 * 108.52129 * 186.21214 * 4 2 1 6 6 C 1.36930 * 120.88154 * 231.18769 * 5 4 2 7 7 H 1.08001 * 119.99918 * 30.81177 * 6 5 4 8 8 C 1.38806 * 120.00202 * 210.80216 * 6 5 4 9 9 N 1.31626 * 119.99745 * 12.07774 * 8 6 5 10 10 Si 1.86792 * 120.00546 * 192.07585 * 8 6 5 11 11 H 1.48503 * 109.47767 * 180.02562 * 10 8 6 12 12 H 1.48504 * 109.47177 * 300.00539 * 10 8 6 13 13 H 1.48507 * 109.47200 * 60.00037 * 10 8 6 14 14 C 1.47083 * 118.23322 * 51.46385 * 5 4 2 15 15 C 1.53697 * 108.27645 * 308.48008 * 14 5 4 16 16 N 1.46904 * 109.25726 * 54.08495 * 15 14 5 17 17 C 1.46898 * 111.00249 * 172.60458 * 16 15 14 18 18 C 1.52999 * 109.46825 * 49.76677 * 17 16 15 19 19 O 1.42897 * 109.47321 * 66.22629 * 18 17 16 20 20 H 1.09004 * 109.47727 * 190.44679 * 1 2 3 21 21 H 1.09011 * 109.47101 * 310.44802 * 1 2 3 22 22 H 1.09007 * 109.46874 * 70.44009 * 1 2 3 23 23 H 1.09000 * 109.62642 * 66.50968 * 4 2 1 24 24 H 1.08993 * 109.79361 * 306.02036 * 4 2 1 25 25 H 0.97003 * 119.99998 * 179.97438 * 9 8 6 26 26 H 1.08999 * 109.62693 * 68.25123 * 14 5 4 27 27 H 1.09004 * 109.62260 * 188.83470 * 14 5 4 28 28 H 1.09000 * 109.64889 * 294.08255 * 15 14 5 29 29 H 1.08999 * 109.44335 * 173.96480 * 15 14 5 30 30 H 1.08998 * 109.47070 * 169.76263 * 17 16 15 31 31 H 1.08999 * 109.47174 * 289.76745 * 17 16 15 32 32 H 1.08996 * 109.47425 * 186.22999 * 18 17 16 33 33 H 1.09003 * 109.47444 * 306.22797 * 18 17 16 34 34 H 0.96698 * 114.00143 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2501 5 7 3.5042 -0.8434 -1.1553 6 6 4.3104 -0.4430 -2.1872 7 1 4.0039 0.3710 -2.8274 8 6 5.5217 -1.0831 -2.4103 9 7 5.7911 -2.2149 -1.7945 10 14 6.7694 -0.3387 -3.5842 11 1 7.9706 -1.2095 -3.6476 12 1 6.1691 -0.2249 -4.9377 13 1 7.1601 1.0102 -3.1012 14 6 4.0778 -1.4101 0.0748 15 6 3.4866 -0.6538 1.2752 16 7 2.0201 -0.6939 1.1985 17 6 1.4139 -0.1359 2.4147 18 6 2.0489 1.2211 2.7246 19 8 1.7043 2.1538 1.6983 20 1 -0.3635 -1.0106 0.1863 21 1 -0.3634 0.6668 0.7821 22 1 -0.3633 0.3441 -0.9684 23 1 1.7776 -0.1504 -2.1388 24 1 1.5959 -1.7168 -1.3097 25 1 6.6374 -2.6624 -1.9507 26 1 3.8241 -2.4679 0.1435 27 1 5.1611 -1.2904 0.0625 28 1 3.8235 0.3827 1.2574 29 1 3.8156 -1.1274 2.2001 30 1 0.3423 -0.0090 2.2612 31 1 1.5834 -0.8156 3.2498 32 1 1.6805 1.5841 3.6840 33 1 3.1327 1.1136 2.7688 34 1 2.0733 3.0378 1.8301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306382629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:59 Heat of formation + Delta-G solvation = -39.753743 kcal Electronic energy + Delta-G solvation = -15564.252791 eV Core-core repulsion = 13111.071441 eV Total energy + Delta-G solvation = -2453.181350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33824 -37.61220 -35.91233 -33.56851 -32.91602 -30.30840 -27.83190 -27.31633 -25.01505 -23.05095 -22.48313 -20.17897 -18.60556 -18.40576 -17.19880 -16.49178 -16.27577 -15.58335 -15.48175 -15.04628 -14.83773 -14.32317 -13.93735 -13.25912 -13.10286 -12.93419 -12.77267 -12.71154 -12.52804 -12.29833 -12.20731 -11.94569 -11.75302 -11.43787 -11.32054 -10.69469 -10.58385 -9.06990 -8.58265 -7.86694 -5.37269 1.45187 1.47728 1.54940 2.49995 3.07028 3.28377 3.51701 3.71556 4.11418 4.31553 4.34273 4.35419 4.47355 4.54930 4.68562 4.72250 4.83357 4.90031 4.94502 4.97411 5.09501 5.13819 5.31369 5.37070 5.55104 5.61539 5.70297 6.32457 6.41092 6.42435 6.88855 7.14263 7.83602 8.40796 9.19193 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.009063 C = 0.008900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.324951 B = 3088.650696 C = 3145.245528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.076 3.924 3 H 0.051 0.949 4 C 0.149 3.851 5 N -0.614 5.614 6 C -0.267 4.267 7 H 0.062 0.938 8 C -0.050 4.050 9 N -0.937 5.937 10 Si 0.973 3.027 11 H -0.291 1.291 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.188 3.812 15 C 0.051 3.949 16 N -0.536 5.536 17 C 0.043 3.957 18 C 0.040 3.960 19 O -0.581 6.581 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.007 0.993 25 H 0.251 0.749 26 H -0.005 1.005 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 7.245 9.393 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 H 0.069 0.931 4 C 0.023 3.977 5 N -0.337 5.337 6 C -0.397 4.397 7 H 0.080 0.920 8 C -0.245 4.245 9 N -0.582 5.582 10 Si 0.800 3.200 11 H -0.217 1.217 12 H -0.201 1.201 13 H -0.203 1.203 14 C 0.062 3.938 15 C -0.078 4.078 16 N -0.261 5.261 17 C -0.085 4.085 18 C -0.039 4.039 19 O -0.388 6.388 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.301 6.132 9.085 13.749 hybrid contribution 1.515 1.220 -0.424 1.991 sum -6.785 7.352 8.661 13.233 Atomic orbital electron populations 1.21726 0.93171 1.01693 1.01988 1.22062 0.95623 0.95895 0.89783 0.93092 1.21215 0.83973 0.96503 0.95996 1.44349 1.00997 1.73729 1.14669 1.19463 1.00901 1.10998 1.08388 0.92026 1.25947 1.01925 0.95818 1.00849 1.70163 1.24058 1.16945 1.47081 0.85272 0.78146 0.77557 0.79009 1.21690 1.20111 1.20258 1.20689 0.96567 0.92796 0.83788 1.22649 0.88077 0.98169 0.98938 1.62110 1.06206 1.55019 1.02717 1.22576 1.00460 0.92463 0.92964 1.22973 0.98836 0.90995 0.91060 1.86572 1.77742 1.24908 1.49622 0.92537 0.91416 0.92081 0.93195 0.97507 0.93995 0.98678 0.92819 0.95866 0.90383 0.89130 0.88306 0.91250 0.94310 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 8.40 71.98 0.60 -3.23 16 2 C 0.08 2.88 2.03 44.99 0.09 2.97 16 3 H 0.05 2.10 5.85 -2.39 -0.01 2.08 16 4 C 0.15 6.92 5.95 86.35 0.51 7.44 16 5 N -0.61 -33.45 3.02 -697.23 -2.10 -35.56 16 6 C -0.27 -15.56 9.61 84.03 0.81 -14.75 16 7 H 0.06 3.51 7.86 -2.91 -0.02 3.48 16 8 C -0.05 -2.90 5.03 84.86 0.43 -2.48 16 9 N -0.94 -57.31 11.14 21.65 0.24 -57.07 16 10 Si 0.97 46.11 29.57 68.60 2.03 48.14 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.19 9.74 5.39 86.50 0.47 10.21 16 15 C 0.05 2.06 4.66 86.54 0.40 2.46 16 16 N -0.54 -19.46 4.67 -869.10 -4.06 -23.53 16 17 C 0.04 1.15 5.76 86.30 0.50 1.65 16 18 C 0.04 0.96 6.68 71.98 0.48 1.44 16 19 O -0.58 -15.12 10.78 -148.98 -1.61 -16.73 16 20 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.07 1.82 6.61 -2.38 -0.02 1.80 16 22 H 0.06 1.72 8.11 -2.38 -0.02 1.70 16 23 H 0.05 2.27 7.95 -2.39 -0.02 2.25 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.05 3.08 6.27 -2.39 -0.01 3.06 16 28 H 0.02 0.96 6.54 -2.39 -0.02 0.95 16 29 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 30 H 0.09 2.27 5.65 -2.39 -0.01 2.26 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.01 6.09 -2.39 -0.01 1.00 16 34 H 0.39 6.90 9.12 -74.06 -0.68 6.22 16 Total: -1.00 -68.41 261.20 -0.80 -69.21 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.41 Total: 9.83 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 4.29 Total: 5.71 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -5.93 Total: -116.16 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.61 Total: -16.73 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.41 -0.80 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306382629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.457 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds